Gm44096 Gene Detail

Summary

• Symbol
  Gm44096
• Name
  predicted gene, 44096

• Feature Type
  lncRNA gene
• IDs
  MGI:5690488
  NCBI Gene: 115490373
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:124469122-124471327 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  202 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690488	lncRNA gene	Chr6:124469112-124471359 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004352	antisense lncRNA gene	Chr6:127750058-127752249 (-)
A/J	MGP_AJ_G0004329	antisense lncRNA gene	Chr6:122882646-122884861 (-)
AKR/J	MGP_AKRJ_G0004312	antisense lncRNA gene	Chr6:126274268-126276475 (-)
BALB/cJ	MGP_BALBcJ_G0004315	antisense lncRNA gene	Chr6:122520708-122523020 (-)
C3H/HeJ	MGP_C3HHeJ_G0004264	antisense lncRNA gene	Chr6:126332555-126334762 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004465	antisense lncRNA gene	Chr6:131084885-131087090 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004226	antisense lncRNA gene	Chr6:126595826-126598032 (-)
CBA/J	MGP_CBAJ_G0004258	antisense lncRNA gene	Chr6:136238810-136241015 (-)
DBA/2J	MGP_DBA2J_G0004273	antisense lncRNA gene	Chr6:121822738-121824947 (-)
FVB/NJ	MGP_FVBNJ_G0004290	antisense lncRNA gene	Chr6:120758654-120760835 (-)
LP/J	MGP_LPJ_G0004353	antisense lncRNA gene	Chr6:127959199-127961392 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004281	antisense lncRNA gene	Chr6:140203041-140205238 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004462	antisense lncRNA gene	Chr6:126186029-126190683 (-)
PWK/PhJ	MGP_PWKPhJ_G0004179	antisense lncRNA gene	Chr6:120070450-120072726 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004121	antisense lncRNA gene	Chr6:124307482-124309680 (-)
WSB/EiJ	MGP_WSBEiJ_G0004263	antisense lncRNA gene	Chr6:126531837-126533998 (-)

Homology

• Gene Tree
  Gm44096
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000107552 (Evidence)
• NCBI Gene
  115490373

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107552	Ensembl Gene Model | MGI Sequence Detail	2206	C57BL/6J
transcript	ENSMUST00000203171	Ensembl | MGI Sequence Detail	504	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44096:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63094	Chr6:124473061-124473066 (-)	-1,737 bp