Gm44097 Gene Detail

Summary

• Symbol
  Gm44097
• Name
  predicted gene, 44097

• Feature Type
  lncRNA gene
• IDs
  MGI:5690489
  NCBI Gene: 115490358
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:87634728-87640671 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  290 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690489	lncRNA gene	Chr6:87634728-87640805 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004310	antisense lncRNA gene	Chr6:89016080-89023241 (+)
A/J	MGP_AJ_G0004288	antisense lncRNA gene	Chr6:85578213-85584293 (+)
AKR/J	MGP_AKRJ_G0004270	antisense lncRNA gene	Chr6:88056208-88063618 (+)
BALB/cJ	MGP_BALBcJ_G0004274	antisense lncRNA gene	Chr6:85576185-85582201 (+)
C3H/HeJ	MGP_C3HHeJ_G0004231	antisense lncRNA gene	Chr6:96409406-96416011 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004423	antisense lncRNA gene	Chr6:91397578-91406198 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003894	antisense lncRNA gene	Chr6:83757720-83763646 (+)
CAST/EiJ	MGP_CASTEiJ_G0004184	antisense lncRNA gene	Chr6:88135881-88141845 (+)
CBA/J	MGP_CBAJ_G0004216	antisense lncRNA gene	Chr6:94936314-94943615 (+)
DBA/2J	MGP_DBA2J_G0004232	antisense lncRNA gene	Chr6:84881251-84887327 (+)
FVB/NJ	MGP_FVBNJ_G0004248	antisense lncRNA gene	Chr6:84066271-84073077 (+)
LP/J	MGP_LPJ_G0004311	antisense lncRNA gene	Chr6:89035124-89041994 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004239	antisense lncRNA gene	Chr6:99079638-99086663 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004421	antisense lncRNA gene	Chr6:87898447-87904479 (+)
PWK/PhJ	MGP_PWKPhJ_G0004137	antisense lncRNA gene	Chr6:83845156-83851296 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004080	antisense lncRNA gene	Chr6:86718950-86726602 (+)
WSB/EiJ	MGP_WSBEiJ_G0004221	antisense lncRNA gene	Chr6:88359126-88365651 (+)

Homology

• Gene Tree
  Gm44097
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000107593 (Evidence)
• NCBI Gene
  115490358

Representative Sequences			Length	Strain/Species
genomic	115490358	NCBI Gene Model | MGI Sequence Detail	5944	C57BL/6J
transcript	XR_003956328	RefSeq | MGI Sequence Detail	619	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44097:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57546	Chr6:87634730-87634741 (+)	8 bp
Tssr57547	Chr6:87634759-87634766 (+)	35 bp