Gm44117 Gene Detail

Summary

• Symbol
  Gm44117
• Name
  predicted gene, 44117

• Feature Type
  lncRNA gene
• IDs
  MGI:5690509
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:90436693-90438450 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690509	lncRNA gene	Chr6:90436693-90438450 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007018	lincRNA gene	Chr6:91992070-91993827 (-)
A/J	MGP_AJ_G0007014	lincRNA gene	Chr6:88491703-88493460 (-)
AKR/J	MGP_AKRJ_G0006983	lincRNA gene	Chr6:90969955-90971712 (-)
BALB/cJ	MGP_BALBcJ_G0006989	lincRNA gene	Chr6:88437916-88439673 (-)
C3H/HeJ	MGP_C3HHeJ_G0006934	lincRNA gene	Chr6:93477311-93479068 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007155	lincRNA gene	Chr6:94417204-94418961 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006387	lincRNA gene	Chr6:86483215-86484953 (-)
CAST/EiJ	MGP_CASTEiJ_G0006846	lincRNA gene	Chr6:91075054-91076806 (-)
CBA/J	MGP_CBAJ_G0006914	lincRNA gene	Chr6:97945163-97946920 (-)
DBA/2J	MGP_DBA2J_G0006936	lincRNA gene	Chr6:87685200-87686957 (-)
FVB/NJ	MGP_FVBNJ_G0006960	lincRNA gene	Chr6:86886322-86888079 (-)
LP/J	MGP_LPJ_G0007021	lincRNA gene	Chr6:91968404-91970161 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006940	lincRNA gene	Chr6:102029471-102031228 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007160	lincRNA gene	Chr6:90804413-90806170 (-)
PWK/PhJ	MGP_PWKPhJ_G0006785	lincRNA gene	Chr6:86629914-86631671 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006695	lincRNA gene	Chr6:89700060-89701818 (-)
WSB/EiJ	MGP_WSBEiJ_G0006903	lincRNA gene	Chr6:91271228-91272985 (-)

Homology

• Gene Tree
  Gm44117
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107605 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107605	Ensembl Gene Model | MGI Sequence Detail	1758	C57BL/6J
transcript	ENSMUST00000204442	Ensembl | MGI Sequence Detail	1758	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;