Gm44123 Gene Detail

Summary

• Symbol
  Gm44123
• Name
  predicted gene, 44123

• Feature Type
  lncRNA gene
• IDs
  MGI:5690515
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:90666713-90667811 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690515	lncRNA gene	Chr6:90666713-90667811 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004321	antisense lncRNA gene	Chr6:92242824-92243922 (+)
A/J	MGP_AJ_G0004299	antisense lncRNA gene	Chr6:88729452-88730550 (+)
AKR/J	MGP_AKRJ_G0004281	antisense lncRNA gene	Chr6:91198922-91200020 (+)
BALB/cJ	MGP_BALBcJ_G0004285	antisense lncRNA gene	Chr6:88676182-88677280 (+)
C3H/HeJ	MGP_C3HHeJ_G0004220	antisense lncRNA gene	Chr6:93240660-93241758 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004434	antisense lncRNA gene	Chr6:94663100-94664198 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003902	antisense lncRNA gene	Chr6:86715771-86716869 (+)
CAST/EiJ	MGP_CASTEiJ_G0004195	antisense lncRNA gene	Chr6:91308847-91309945 (+)
CBA/J	MGP_CBAJ_G0004227	antisense lncRNA gene	Chr6:98193679-98194777 (+)
DBA/2J	MGP_DBA2J_G0004243	antisense lncRNA gene	Chr6:87922757-87923855 (+)
FVB/NJ	MGP_FVBNJ_G0004259	antisense lncRNA gene	Chr6:87123313-87124411 (+)
LP/J	MGP_LPJ_G0004322	antisense lncRNA gene	Chr6:92209081-92210179 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004250	antisense lncRNA gene	Chr6:102268118-102269216 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004432	antisense lncRNA gene	Chr6:91042386-91043484 (+)
PWK/PhJ	MGP_PWKPhJ_G0004148	antisense lncRNA gene	Chr6:86862729-86863827 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004091	antisense lncRNA gene	Chr6:89947476-89948574 (+)
WSB/EiJ	MGP_WSBEiJ_G0004232	antisense lncRNA gene	Chr6:91505940-91507038 (+)

Homology

• Gene Tree
  Gm44123
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107999 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107999	Ensembl Gene Model | MGI Sequence Detail	1099	C57BL/6J
transcript	ENSMUST00000204662	Ensembl | MGI Sequence Detail	577	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;