Gm44140 Gene Detail

Summary

• Symbol
  Gm44140
• Name
  predicted gene, 44140

• Feature Type
  lncRNA gene
• IDs
  MGI:5690532
  NCBI Gene: 108169174
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:136491974-136496029 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  202 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690532	lncRNA gene	Chr6:136465107-136496029 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004763	bidirectional promoter lncRNA gene	Chr6:140943095-140947144 (-)
A/J	MGP_AJ_G0004744	bidirectional promoter lncRNA gene	Chr6:135365993-135370026 (-)
AKR/J	MGP_AKRJ_G0004724	bidirectional promoter lncRNA gene	Chr6:139484802-139488835 (-)
BALB/cJ	MGP_BALBcJ_G0004726	bidirectional promoter lncRNA gene	Chr6:135233103-135237135 (-)
C3H/HeJ	MGP_C3HHeJ_G0004674	bidirectional promoter lncRNA gene	Chr6:139522736-139526745 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004876	bidirectional promoter lncRNA gene	Chr6:144809951-144814006 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004313	bidirectional promoter lncRNA gene	Chr6:134525655-134529857 (-)
CAST/EiJ	MGP_CASTEiJ_G0004628	bidirectional promoter lncRNA gene	Chr6:139010895-139014962 (-)
CBA/J	MGP_CBAJ_G0004667	bidirectional promoter lncRNA gene	Chr6:150184429-150188455 (-)
DBA/2J	MGP_DBA2J_G0004685	bidirectional promoter lncRNA gene	Chr6:134228966-134232942 (-)
FVB/NJ	MGP_FVBNJ_G0004704	bidirectional promoter lncRNA gene	Chr6:133138871-133143257 (-)
LP/J	MGP_LPJ_G0004764	bidirectional promoter lncRNA gene	Chr6:141074673-141079712 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004689	bidirectional promoter lncRNA gene	Chr6:154080385-154084362 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004879	bidirectional promoter lncRNA gene	Chr6:139255115-139259149 (-)
PWK/PhJ	MGP_PWKPhJ_G0004581	bidirectional promoter lncRNA gene	Chr6:132741794-132745859 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004514	bidirectional promoter lncRNA gene	Chr6:137496894-137500999 (-)
WSB/EiJ	MGP_WSBEiJ_G0004673	bidirectional promoter lncRNA gene	Chr6:139874552-139879112 (-)

Homology

• Gene Tree
  Gm44140
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  7

• Ensembl
  ENSMUSG00000107702 (Evidence)
• NCBI Gene
  108169174

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107702	Ensembl Gene Model | MGI Sequence Detail	4056	C57BL/6J
transcript	ENSMUST00000204157	Ensembl | MGI Sequence Detail	675	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44140:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63805	Chr6:136496056-136496075 (-)	-37 bp
Tssr63804	Chr6:136495759-136495770 (-)	264 bp
Tssr63803	Chr6:136495496-136495499 (-)	531 bp