Gm44172 Gene Detail

Summary

• Symbol
  Gm44172
• Name
  predicted gene, 44172

• Feature Type
  lncRNA gene
• IDs
  MGI:5690564
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:71428976-71435982 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690564	lncRNA gene	Chr6:71428976-71435982 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006987	lincRNA gene	Chr6:71932777-71939738 (+)
A/J	MGP_AJ_G0006983	lincRNA gene	Chr6:69165010-69171954 (+)
AKR/J	MGP_AKRJ_G0006951	lincRNA gene	Chr6:71151020-71164683 (+)
BALB/cJ	MGP_BALBcJ_G0006959	lincRNA gene	Chr6:69195683-69202669 (+)
C3H/HeJ	MGP_C3HHeJ_G0006966	lincRNA gene	Chr6:113074795-113091203 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007122	lincRNA gene	Chr6:73826170-73834895 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006364	lincRNA gene	Chr6:68355348-68362811 (+)
CAST/EiJ	MGP_CASTEiJ_G0006818	lincRNA gene	Chr6:71024412-71031419 (+)
CBA/J	MGP_CBAJ_G0006884	lincRNA gene	Chr6:76762161-76778576 (+)
DBA/2J	MGP_DBA2J_G0006904	lincRNA gene	Chr6:68543981-68558594 (+)
FVB/NJ	MGP_FVBNJ_G0006928	lincRNA gene	Chr6:67907487-67914584 (+)
LP/J	MGP_LPJ_G0006988	lincRNA gene	Chr6:71856780-71865302 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006908	lincRNA gene	Chr6:80245505-80273564 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007127	lincRNA gene	Chr6:70993905-71002409 (+)
PWK/PhJ	MGP_PWKPhJ_G0006756	lincRNA gene	Chr6:67420782-67427980 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006666	lincRNA gene	Chr6:69711292-69718244 (+)
WSB/EiJ	MGP_WSBEiJ_G0006873	lincRNA gene	Chr6:71343795-71350727 (+)

Homology

• Gene Tree
  Gm44172
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108213 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108213	Ensembl Gene Model | MGI Sequence Detail	7007	C57BL/6J
transcript	ENSMUST00000203903	Ensembl | MGI Sequence Detail	1235	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;