Gm44180 Pseudogene Detail

Summary

• Symbol
  Gm44180
• Name
  predicted gene, 44180

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5690572
  NCBI Gene: 115490335
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:115746881-115747288 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690572	pseudogene	Chr6:115746727-115747777 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013662	pseudogene	Chr6:118415863-118416270 (-)
A/J	MGP_AJ_G0013646	pseudogene	Chr6:113866079-113866486 (-)
AKR/J	MGP_AKRJ_G0013609	pseudogene	Chr6:116928339-116928731 (-)
BALB/cJ	MGP_BALBcJ_G0013626	pseudogene	Chr6:113674655-113675062 (-)
C3H/HeJ	MGP_C3HHeJ_G0013312	pseudogene	Chr6:67373845-67374237 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014013	pseudogene	Chr6:121431703-121432110 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011770	pseudogene	Chr5:133267341-133267677 (+)
CAST/EiJ	MGP_CASTEiJ_G0013518	pseudogene	Chr8:19220970-19221305 (-)
CBA/J	MGP_CBAJ_G0013444	pseudogene	Chr6:126207358-126207750 (-)
DBA/2J	MGP_DBA2J_G0013524	pseudogene	Chr6:112791893-112792300 (-)
FVB/NJ	MGP_FVBNJ_G0013524	pseudogene	Chr6:111969373-111969780 (-)
LP/J	MGP_LPJ_G0013601	pseudogene	Chr6:118426163-118426570 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013537	pseudogene	Chr6:130379427-130379834 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014005	pseudogene	Chr6:116950197-116950604 (-)
PWK/PhJ	MGP_PWKPhJ_G0012641	pseudogene	Chr5:138265812-138266144 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012431	pseudogene	Chr5:141329003-141329339 (+)
WSB/EiJ	MGP_WSBEiJ_G0012866	pseudogene	Chr5:144400165-144400497 (+)

Homology

• Gene Tree
  Gm44180
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000108204 (Evidence)
• NCBI Gene
  115490335

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108204	Ensembl Gene Model | MGI Sequence Detail	408	C57BL/6J
transcript	ENSMUST00000203671	Ensembl | MGI Sequence Detail	408	Not Applicable
polypeptide	XP_030111550	RefSeq | MGI Sequence Detail	149	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;