Gm44511 Gene Detail

Summary

• Symbol
  Gm44511
• Name
  predicted gene 44511

• Feature Type
  protein coding gene
• IDs
  MGI:5753087
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:128757248-128803278 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  2091 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753087	protein coding gene	Chr6:128757248-128803278 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0031331	protein coding gene	Chr6:132250732-132480780 (-)
A/J	MGP_AJ_G0031303	protein coding gene	Chr6:127163525-127408960 (-)
AKR/J	MGP_AKRJ_G0031230	protein coding gene	Chr6:130598032-130858521 (-)
BALB/cJ	MGP_BALBcJ_G0031309	protein coding gene	Chr6:126750954-127000563 (-)
C3H/HeJ	MGP_C3HHeJ_G0031034	protein coding gene	Chr6:130757982-131046131 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0031771	protein coding gene	Chr6:135887656-135950322 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028916	protein coding gene	Chr6:124675698-124728282 (-)
CAST/EiJ	MGP_CASTEiJ_G0030414	protein coding gene	Chr6:131037270-131247503 (-)
CBA/J	MGP_CBAJ_G0030994	protein coding gene	Chr6:140935853-141250088 (-)
DBA/2J	MGP_DBA2J_G0031153	protein coding gene	Chr6:126265430-126350789 (-)
FVB/NJ	MGP_FVBNJ_G0031103	protein coding gene	Chr6:125165117-125236217 (-)
LP/J	MGP_LPJ_G0031230	protein coding gene	Chr6:132363064-132663704 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031140	protein coding gene	Chr6:144992429-145087617 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031804	protein coding gene	Chr6:130811297-130884735 (-)
PWK/PhJ	MGP_PWKPhJ_G0030133	protein coding gene	Chr6:124544846-124601833 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0029962	protein coding gene	Chr6:128973730-128982254 (-)
WSB/EiJ	MGP_WSBEiJ_G0030499	protein coding gene	Chr6:131010348-131277423 (-)

Homology

• Gene Tree
  Gm44511
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• UniProt
  4

• Ensembl
  ENSMUSG00000107872 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107872	Ensembl Gene Model | MGI Sequence Detail	46031	C57BL/6J
transcript	ENSMUST00000204394	Ensembl | MGI Sequence Detail	678	Not Applicable
polypeptide	ENSMUSP00000145481	Ensembl | MGI Sequence Detail	223	Not Applicable

Protein
Information

• UniProt
  4 Sequences
• InterPro Domains
  IPR016187 C-type lectin fold
  IPR001304 C-type lectin-like
  IPR016186 C-type lectin-like/link domain superfamily
  IPR051527 Killer cell lectin-like receptor subfamily B
  IPR033992 Natural killer cell receptor-like, C-type lectin-like domain

References

• Summaries
  All 3
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44511:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63514	Chr6:128803240-128803293 (-)	11 bp
Tssr63513	Chr6:128780069-128780073 (-)	23,207 bp