Gm44646 Gene Detail

Summary

• Symbol
  Gm44646
• Name
  predicted gene 44646

• Feature Type
  lncRNA gene
• IDs
  MGI:5753222
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:44151113-44153690 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753222	lncRNA gene	Chr7:44151113-44153690 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004452	antisense lncRNA gene	Chr7:44675596-44678147 (+)
A/J	MGP_AJ_G0004431	antisense lncRNA gene	Chr7:43858018-43860554 (+)
AKR/J	MGP_AKRJ_G0004414	antisense lncRNA gene	Chr7:45060739-45063306 (+)
BALB/cJ	MGP_BALBcJ_G0004416	antisense lncRNA gene	Chr7:43854107-43856655 (+)
C3H/HeJ	MGP_C3HHeJ_G0004366	antisense lncRNA gene	Chr7:45552663-45555186 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004567	antisense lncRNA gene	Chr7:46933311-46935871 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004022	antisense lncRNA gene	Chr7:46443354-46445819 (+)
CAST/EiJ	MGP_CASTEiJ_G0004326	antisense lncRNA gene	Chr7:36928485-36931049 (+)
CBA/J	MGP_CBAJ_G0004360	antisense lncRNA gene	Chr7:48463238-48465801 (+)
DBA/2J	MGP_DBA2J_G0004374	antisense lncRNA gene	Chr7:43532345-43534900 (+)
FVB/NJ	MGP_FVBNJ_G0004392	antisense lncRNA gene	Chr7:43270655-43273204 (+)
LP/J	MGP_LPJ_G0004455	antisense lncRNA gene	Chr7:45358040-45360608 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004383	antisense lncRNA gene	Chr7:47208347-47210902 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004565	antisense lncRNA gene	Chr7:44277002-44279574 (+)
PWK/PhJ	MGP_PWKPhJ_G0004279	antisense lncRNA gene	Chr7:36880007-36882560 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004220	antisense lncRNA gene	Chr7:32285050-32289302 (+)
WSB/EiJ	MGP_WSBEiJ_G0004365	antisense lncRNA gene	Chr7:44739388-44741924 (+)

Homology

• Gene Tree
  Gm44646
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000108607 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108607	Ensembl Gene Model | MGI Sequence Detail	2578	C57BL/6J
transcript	ENSMUST00000207290	Ensembl | MGI Sequence Detail	513	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;