Gm44649 Gene Detail

Summary

• Symbol
  Gm44649
• Name
  predicted gene 44649

• Feature Type
  lncRNA gene
• IDs
  MGI:5753225
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:80401570-80408360 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  296 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753225	lncRNA gene	Chr7:80401570-80408360 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004474	antisense lncRNA gene	Chr7:82745026-82751653 (+)
A/J	MGP_AJ_G0004454	antisense lncRNA gene	Chr7:80806660-80813329 (+)
AKR/J	MGP_AKRJ_G0004437	antisense lncRNA gene	Chr7:82578035-82584662 (+)
BALB/cJ	MGP_BALBcJ_G0004439	antisense lncRNA gene	Chr7:80480321-80486981 (+)
C3H/HeJ	MGP_C3HHeJ_G0004388	antisense lncRNA gene	Chr7:83206370-83212995 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004590	antisense lncRNA gene	Chr7:85982691-85990450 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004044	antisense lncRNA gene	Chr7:83322033-83328683 (+)
CAST/EiJ	MGP_CASTEiJ_G0004348	antisense lncRNA gene	Chr7:74099274-74106020 (+)
CBA/J	MGP_CBAJ_G0004383	antisense lncRNA gene	Chr7:88841915-88853778 (+)
DBA/2J	MGP_DBA2J_G0004397	antisense lncRNA gene	Chr7:79360244-79366981 (+)
FVB/NJ	MGP_FVBNJ_G0004414	antisense lncRNA gene	Chr7:79285796-79292463 (+)
LP/J	MGP_LPJ_G0004478	antisense lncRNA gene	Chr7:83985989-83992662 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004404	antisense lncRNA gene	Chr7:88976998-88983420 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004588	antisense lncRNA gene	Chr7:81999513-82007136 (+)
PWK/PhJ	MGP_PWKPhJ_G0004301	antisense lncRNA gene	Chr7:72555684-72562410 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004242	antisense lncRNA gene	Chr7:68998150-69004697 (+)
WSB/EiJ	MGP_WSBEiJ_G0004387	antisense lncRNA gene	Chr7:82359537-82368066 (+)

Homology

• Gene Tree
  Gm44649
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000108321 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108321	Ensembl Gene Model | MGI Sequence Detail	6791	C57BL/6J
transcript	ENSMUST00000206896	Ensembl | MGI Sequence Detail	635	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44649:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2313	Chr7:80401588-80401595 (+)	22 bp