Gm44824 Pseudogene Detail

Summary

• Symbol
  Gm44824
• Name
  predicted gene 44824

• Feature Type
  pseudogene
• IDs
  MGI:5753400
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:126341854-126342082 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753400	pseudogene	Chr7:126341854-126342082 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014009	pseudogene	Chr7:131038601-131038829 (+)
A/J	MGP_AJ_G0014028	pseudogene	Chr7:127567872-127568100 (+)
AKR/J	MGP_AKRJ_G0013962	pseudogene	Chr7:130798921-130799149 (+)
BALB/cJ	MGP_BALBcJ_G0013985	pseudogene	Chr7:127224839-127225067 (+)
C3H/HeJ	MGP_C3HHeJ_G0013820	pseudogene	Chr7:130736730-130736958 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014417	pseudogene	Chr7:136133745-136133973 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012273	pseudogene	Chr7:128759677-128759903 (+)
CAST/EiJ	MGP_CASTEiJ_G0013475	pseudogene	Chr7:122517225-122517453 (+)
CBA/J	MGP_CBAJ_G0013800	pseudogene	Chr7:140713675-140713903 (+)
DBA/2J	MGP_DBA2J_G0013877	pseudogene	Chr7:125542445-125542673 (+)
FVB/NJ	MGP_FVBNJ_G0013878	pseudogene	Chr7:125389206-125389434 (+)
LP/J	MGP_LPJ_G0013956	pseudogene	Chr7:132503949-132504177 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013904	pseudogene	Chr7:141896762-141896990 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014383	pseudogene	Chr7:129806552-129806780 (+)
PWK/PhJ	MGP_PWKPhJ_G0013290	pseudogene	Chr7:118535635-118535863 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013060	pseudogene	Chr7:116656531-116656762 (+)
WSB/EiJ	MGP_WSBEiJ_G0013537	pseudogene	Chr7:130787847-130788075 (+)

Homology

• Gene Tree
  Gm44824
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm44824
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108554 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108554	Ensembl Gene Model | MGI Sequence Detail	229	C57BL/6J
transcript	ENSMUST00000207021	Ensembl | MGI Sequence Detail	229	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:232341 Arbogast T, et al., Reciprocal Effects on Neurocognitive and Metabolic Phenotypes in Mouse Models of 16p11.2 Deletion and Duplication Syndromes. PLoS Genet. 2016 Feb;12(2):e1005709
• Latest
  J:348233 Rusu A, et al., Day-to-day spontaneous social behaviours is quantitatively and qualitatively affected in a 16p11.2 deletion mouse model. Front Behav Neurosci. 2023;17:1294558