Gm44850 Gene Detail

Summary

• Symbol
  Gm44850
• Name
  predicted gene 44850

• Feature Type
  lncRNA gene
• IDs
  MGI:5753426
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:127814788-127819960 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  258 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753426	lncRNA gene	Chr7:127814788-127819960 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004513	antisense lncRNA gene	Chr7:132621624-132626858 (-)
A/J	MGP_AJ_G0004493	antisense lncRNA gene	Chr7:129059657-129064830 (-)
AKR/J	MGP_AKRJ_G0004476	antisense lncRNA gene	Chr7:132436777-132441950 (-)
BALB/cJ	MGP_BALBcJ_G0004478	antisense lncRNA gene	Chr7:128724495-128729668 (-)
C3H/HeJ	MGP_C3HHeJ_G0004427	antisense lncRNA gene	Chr7:132320834-132326043 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004628	antisense lncRNA gene	Chr7:137794477-137801596 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004082	antisense lncRNA gene	Chr7:130242336-130247707 (-)
CAST/EiJ	MGP_CASTEiJ_G0004387	antisense lncRNA gene	Chr7:124110797-124115865 (-)
CBA/J	MGP_CBAJ_G0004422	antisense lncRNA gene	Chr7:142492851-142499107 (-)
DBA/2J	MGP_DBA2J_G0004436	antisense lncRNA gene	Chr7:127049334-127054609 (-)
FVB/NJ	MGP_FVBNJ_G0004453	antisense lncRNA gene	Chr7:126908135-126913303 (-)
LP/J	MGP_LPJ_G0004517	antisense lncRNA gene	Chr7:134101673-134106869 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004442	antisense lncRNA gene	Chr7:143530391-143536377 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004627	antisense lncRNA gene	Chr7:131398630-131403803 (-)
PWK/PhJ	MGP_PWKPhJ_G0004340	antisense lncRNA gene	Chr7:120057151-120062421 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004281	antisense lncRNA gene	Chr7:118202444-118207247 (-)
WSB/EiJ	MGP_WSBEiJ_G0004426	antisense lncRNA gene	Chr7:132376272-132382244 (-)

Homology

• Gene Tree
  Gm44850
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108604 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108604	Ensembl Gene Model | MGI Sequence Detail	5173	C57BL/6J
transcript	ENSMUST00000205621	Ensembl | MGI Sequence Detail	1329	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44850:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75087	Chr7:127820062-127820086 (-)	-114 bp
Tssr75086	Chr7:127820040-127820051 (-)	-86 bp