Gm44965 Gene Detail

Summary

• Symbol
  Gm44965
• Name
  predicted gene 44965

• Feature Type
  protein coding gene
• IDs
  MGI:5753541
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:48570875-48596212 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  715 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753541	protein coding gene	Chr6:48570875-48596212 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0030701	protein coding gene	Chr6:47545730-47570631 (+)
A/J	MGP_AJ_G0030672	protein coding gene	Chr6:45384316-45409770 (+)
AKR/J	MGP_AKRJ_G0030597	protein coding gene	Chr6:46978907-47003705 (+)
BALB/cJ	MGP_BALBcJ_G0030682	protein coding gene	Chr6:45714790-45739668 (+)
C3H/HeJ	MGP_C3HHeJ_G0030395	protein coding gene	Chr6:46985247-47009773 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0031137	protein coding gene	Chr6:48662391-48687644 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028344	protein coding gene	Chr6:43013944-43038846 (+)
CAST/EiJ	MGP_CASTEiJ_G0029799	protein coding gene	Chr6:46711550-46734249 (+)
CBA/J	MGP_CBAJ_G0030370	protein coding gene	Chr6:50680969-50709705 (+)
DBA/2J	MGP_DBA2J_G0030519	protein coding gene	Chr6:45300823-45326642 (+)
FVB/NJ	MGP_FVBNJ_G0030471	protein coding gene	Chr6:44930133-44956292 (+)
LP/J	MGP_LPJ_G0030604	protein coding gene	Chr6:47526837-47550235 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030505	protein coding gene	Chr6:53493563-53519433 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031166	protein coding gene	Chr6:46847977-46873510 (+)
PWK/PhJ	MGP_PWKPhJ_G0029511	protein coding gene	Chr6:44834663-44859462 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0029347	protein coding gene	Chr6:46198822-46223874 (+)
WSB/EiJ	MGP_WSBEiJ_G0029876	protein coding gene	Chr6:46846986-46871896 (+)

Homology

• Gene Tree
  Gm44965
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000107789 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107789	Ensembl Gene Model | MGI Sequence Detail	25338	C57BL/6J
transcript	ENSMUST00000204121	Ensembl | MGI Sequence Detail	360	Not Applicable
polypeptide	ENSMUSP00000145212	Ensembl | MGI Sequence Detail	59	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 3
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44965:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56147	Chr6:48570864-48570886 (+)	0 bp
Tssr56148	Chr6:48571138-48571156 (+)	272 bp
Tssr56149	Chr6:48575617-48575622 (+)	4,745 bp