Gm45196 Pseudogene Detail

Summary

• Symbol
  Gm45196
• Name
  predicted gene 45196

• Feature Type
  pseudogene
• IDs
  MGI:5753772
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:43690695-43692954 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  276 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753772	pseudogene	Chr7:43690695-43692954 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040567	pseudogene	Chr7:43190781-43193020 (-)
AKR/J	MGP_AKRJ_G0040498	pseudogene	Chr7:44572203-44574449 (-)
BALB/cJ	MGP_BALBcJ_G0040567	pseudogene	Chr7:43389650-43391889 (-)
C3H/HeJ	MGP_C3HHeJ_G0040201	pseudogene	Chr7:45072249-45074495 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0041237	pseudogene	Chr7:46359913-46362172 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037437	pseudogene	Chr7:45712498-45714766 (+)
CAST/EiJ	MGP_CASTEiJ_G0039248	pseudogene	Chr7:36324100-36326344 (-)
CBA/J	MGP_CBAJ_G0040161	pseudogene	Chr7:47776119-47778359 (-)
DBA/2J	MGP_DBA2J_G0040376	pseudogene	Chr7:42990572-42992816 (-)
FVB/NJ	MGP_FVBNJ_G0040309	pseudogene	Chr7:42759717-42761950 (-)
LP/J	MGP_LPJ_G0040414	pseudogene	Chr7:44845006-44847266 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040300	pseudogene	Chr7:46716886-46719132 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041289	pseudogene	Chr7:43703729-43705981 (-)
PWK/PhJ	MGP_PWKPhJ_G0038920	pseudogene	Chr7:36430959-36433324 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038622	pseudogene	Chr7:31749875-31752132 (-)
WSB/EiJ	MGP_WSBEiJ_G0039501	pseudogene	Chr7:44252191-44254439 (-)

Homology

• Gene Tree
  Gm45196
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000108328 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108328	Ensembl Gene Model | MGI Sequence Detail	2260	C57BL/6J
transcript	ENSMUST00000206751	Ensembl | MGI Sequence Detail	825	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;