Gm45218 Gene Detail

Summary

• Symbol
  Gm45218
• Name
  predicted gene 45218

• Feature Type
  lncRNA gene
• IDs
  MGI:5753794
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:91576214-91582496 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  273 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753794	lncRNA gene	Chr6:91576214-91582496 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007024	lincRNA gene	Chr6:93199972-93206254 (+)
A/J	MGP_AJ_G0007020	lincRNA gene	Chr6:89652431-89658713 (+)
AKR/J	MGP_AKRJ_G0006989	lincRNA gene	Chr6:92139481-92145763 (+)
BALB/cJ	MGP_BALBcJ_G0006995	lincRNA gene	Chr6:89596402-89602684 (+)
C3H/HeJ	MGP_C3HHeJ_G0006928	lincRNA gene	Chr6:92294947-92301229 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007161	lincRNA gene	Chr6:95624450-95630732 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006392	lincRNA gene	Chr6:87635707-87641973 (+)
CAST/EiJ	MGP_CASTEiJ_G0006851	lincRNA gene	Chr6:92258198-92264472 (+)
CBA/J	MGP_CBAJ_G0006920	lincRNA gene	Chr6:99177909-99184191 (+)
DBA/2J	MGP_DBA2J_G0006942	lincRNA gene	Chr6:88834856-88841138 (+)
FVB/NJ	MGP_FVBNJ_G0006966	lincRNA gene	Chr6:88046010-88052291 (+)
LP/J	MGP_LPJ_G0007027	lincRNA gene	Chr6:93156505-93162787 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006946	lincRNA gene	Chr6:103225449-103231730 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007166	lincRNA gene	Chr6:91981432-91987714 (+)
PWK/PhJ	MGP_PWKPhJ_G0006791	lincRNA gene	Chr6:87789672-87795958 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006701	lincRNA gene	Chr6:90894383-90900681 (+)
WSB/EiJ	MGP_WSBEiJ_G0006909	lincRNA gene	Chr6:92454214-92460496 (+)

Homology

• Gene Tree
  Gm45218
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108308 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108308	Ensembl Gene Model | MGI Sequence Detail	6283	C57BL/6J
transcript	ENSMUST00000205533	Ensembl | MGI Sequence Detail	1678	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;