Gm45407 Gene Detail

Summary

• Symbol
  Gm45407
• Name
  predicted gene 45407

• Feature Type
  lncRNA gene
• IDs
  MGI:5791243
  NCBI Gene: 118567594
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:78095470-78099145 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic

Strain
Comparison

• SNPs within 2kb
  286 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5791243	lncRNA gene	Chr8:78091954-78109347 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm45407
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• Ensembl
  ENSMUSG00000109873 (Evidence)
• NCBI Gene
  118567594

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109873	Ensembl Gene Model | MGI Sequence Detail	3676	C57BL/6J
transcript	XR_004935038	RefSeq | MGI Sequence Detail	16526	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;