Gm45700 Pseudogene Detail

Summary

• Symbol
  Gm45700
• Name
  predicted gene 45700

• Feature Type
  pseudogene
• IDs
  MGI:5804815
  NCBI Gene: 108167515
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:127726007-127726353 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5804815	pseudogene	Chr7:127725553-127726382 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014017	pseudogene	Chr7:132531548-132531894 (+)
A/J	MGP_AJ_G0014036	pseudogene	Chr7:128968386-128968732 (+)
AKR/J	MGP_AKRJ_G0013970	pseudogene	Chr7:132329121-132329467 (+)
BALB/cJ	MGP_BALBcJ_G0013993	pseudogene	Chr7:128632174-128632520 (+)
C3H/HeJ	MGP_C3HHeJ_G0013827	pseudogene	Chr7:132221374-132221720 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014425	pseudogene	Chr7:137692508-137692854 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013482	pseudogene	Chr7:124009970-124010316 (+)
CBA/J	MGP_CBAJ_G0013808	pseudogene	Chr7:142383374-142388219 (+)
DBA/2J	MGP_DBA2J_G0013885	pseudogene	Chr7:126951996-126952342 (+)
FVB/NJ	MGP_FVBNJ_G0013886	pseudogene	Chr7:126818700-126819046 (+)
LP/J	MGP_LPJ_G0013966	pseudogene	Chr7:134004065-134004411 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013912	pseudogene	Chr7:143439417-143439763 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014392	pseudogene	Chr7:131304087-131304433 (+)
PWK/PhJ	MGP_PWKPhJ_G0013297	pseudogene	Chr7:119958078-119958424 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013069	pseudogene	Chr7:118103609-118103955 (+)
WSB/EiJ	MGP_WSBEiJ_G0013543	pseudogene	Chr7:132276432-132276778 (+)

Homology

• Gene Tree
  Gm45700
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108578 (Evidence)
• NCBI Gene
  108167515

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108578	Ensembl Gene Model | MGI Sequence Detail	347	C57BL/6J
transcript	ENSMUST00000205866	Ensembl | MGI Sequence Detail	347	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm45700:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69378	Chr7:127725964-127725968 (+)	-41 bp