Gm45738 Gene Detail

Summary

• Symbol
  Gm45738
• Name
  predicted gene 45738

• Feature Type
  lncRNA gene
• IDs
  MGI:5804853
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:48022482-48022889 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5804853	lncRNA gene	Chr6:48022482-48022889 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037057	sense intronic lncRNA gene	Chr6:46954984-46955391 (-)
A/J	MGP_AJ_G0037045	sense intronic lncRNA gene	Chr6:44797869-44798276 (-)
AKR/J	MGP_AKRJ_G0036993	sense intronic lncRNA gene	Chr6:46347179-46347586 (-)
BALB/cJ	MGP_BALBcJ_G0037036	sense intronic lncRNA gene	Chr6:45148723-45149130 (-)
C3H/HeJ	MGP_C3HHeJ_G0036723	sense intronic lncRNA gene	Chr6:46370943-46371350 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037548	sense intronic lncRNA gene	Chr6:47979475-47979882 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034595	sense intronic lncRNA gene	Chr6:42499158-42499557 (-)
CAST/EiJ	MGP_CASTEiJ_G0035911	sense intronic lncRNA gene	Chr6:46104450-46104857 (-)
CBA/J	MGP_CBAJ_G0036698	sense intronic lncRNA gene	Chr6:50021180-50021587 (-)
DBA/2J	MGP_DBA2J_G0036873	sense intronic lncRNA gene	Chr6:44734526-44734933 (-)
FVB/NJ	MGP_FVBNJ_G0036823	sense intronic lncRNA gene	Chr6:44367780-44368187 (-)
LP/J	MGP_LPJ_G0036920	sense intronic lncRNA gene	Chr6:46855837-46856244 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036830	sense intronic lncRNA gene	Chr6:52873799-52874206 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037666	sense intronic lncRNA gene	Chr6:46262101-46262508 (-)
PWK/PhJ	MGP_PWKPhJ_G0035603	sense intronic lncRNA gene	Chr6:44250080-44250487 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035412	sense intronic lncRNA gene	Chr6:45673511-45673918 (-)
WSB/EiJ	MGP_WSBEiJ_G0036111	sense intronic lncRNA gene	Chr6:46264716-46265123 (-)

Homology

• Gene Tree
  Gm45738
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108101 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108101	Ensembl Gene Model | MGI Sequence Detail	408	C57BL/6J
transcript	ENSMUST00000203645	Ensembl | MGI Sequence Detail	233	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;