Gm45901 Gene Detail

Summary

• Symbol
  Gm45901
• Name
  predicted gene 45901

• Feature Type
  lncRNA gene
• IDs
  MGI:5805016
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:90463375-90496462 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  819 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5805016	lncRNA gene	Chr6:90463375-90496462 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007020	lincRNA gene	Chr6:92018752-92051633 (+)
A/J	MGP_AJ_G0007016	lincRNA gene	Chr6:88518382-88553926 (+)
AKR/J	MGP_AKRJ_G0006985	lincRNA gene	Chr6:90996637-91029254 (+)
BALB/cJ	MGP_BALBcJ_G0006991	lincRNA gene	Chr6:88464598-88501243 (+)
C3H/HeJ	MGP_C3HHeJ_G0006932	lincRNA gene	Chr6:93420810-93452391 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007157	lincRNA gene	Chr6:94443887-94479421 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006389	lincRNA gene	Chr6:86509884-86543015 (+)
CAST/EiJ	MGP_CASTEiJ_G0006848	lincRNA gene	Chr6:91101697-91135536 (+)
CBA/J	MGP_CBAJ_G0006916	lincRNA gene	Chr6:97971892-98010451 (+)
DBA/2J	MGP_DBA2J_G0006938	lincRNA gene	Chr6:87711874-87746279 (+)
FVB/NJ	MGP_FVBNJ_G0006962	lincRNA gene	Chr6:86912835-86944593 (+)
LP/J	MGP_LPJ_G0007023	lincRNA gene	Chr6:91995095-92028220 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006942	lincRNA gene	Chr6:102056200-102088658 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007162	lincRNA gene	Chr6:90831090-90864179 (+)
PWK/PhJ	MGP_PWKPhJ_G0006787	lincRNA gene	Chr6:86656657-86689435 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006697	lincRNA gene	Chr6:89728578-89763898 (+)
WSB/EiJ	MGP_WSBEiJ_G0006905	lincRNA gene	Chr6:91297834-91330317 (+)

Homology

• Gene Tree
  Gm45901
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108111 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108111	Ensembl Gene Model | MGI Sequence Detail	33088	C57BL/6J
transcript	ENSMUST00000203807	Ensembl | MGI Sequence Detail	661	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm45901:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57655	Chr6:90463359-90463370 (+)	-10 bp
Tssr57656	Chr6:90463392-90463412 (+)	27 bp