Gm45969 Gene Detail

Summary

• Symbol
  Gm45969
• Name
  predicted gene, 45969

• Feature Type
  lncRNA gene
• IDs
  MGI:5825606
  NCBI Gene: 108167382
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr6:129436751-129478664 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1427 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825606	lncRNA gene	Chr6:129436751-129478664 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  4

• NCBI Gene
  108167382

Representative Sequences			Length	Strain/Species
genomic	108167382	NCBI Gene Model | MGI Sequence Detail	41914	C57BL/6J
transcript	XR_001785378	RefSeq | MGI Sequence Detail	1439	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm45969:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59167	Chr6:129439620-129439640 (+)	2,879 bp
Tssr59168	Chr6:129439828-129439846 (+)	3,086 bp
Tssr59169	Chr6:129448600-129448627 (+)	11,863 bp
Tssr59170	Chr6:129448649-129448657 (+)	11,902 bp
Tssr59171	Chr6:129463551-129463565 (+)	26,807 bp