Gm20646 Gene Detail

Summary

• Symbol
  Gm20646
• Name
  predicted gene 20646
• Synonyms
  Gm46091

• Feature Type
  lncRNA gene
• IDs
  MGI:5313093
  NCBI Gene: 108167623
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:42734085-42783951 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1216 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313093	lncRNA gene	Chr1:42723698-42783951 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037100	sense overlapping lncRNA gene	Chr1:41642964-41696630 (+)
A/J	MGP_AJ_G0037087	sense overlapping lncRNA gene	Chr1:40408931-40458789 (+)
AKR/J	MGP_AKRJ_G0037035	sense overlapping lncRNA gene	Chr1:40920446-40970905 (+)
BALB/cJ	MGP_BALBcJ_G0037078	sense overlapping lncRNA gene	Chr1:40066823-40118275 (+)
C3H/HeJ	MGP_C3HHeJ_G0036765	sense overlapping lncRNA gene	Chr1:41298589-41352601 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037592	sense overlapping lncRNA gene	Chr1:43366811-43418572 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034635	sense overlapping lncRNA gene	Chr1:37235786-37286427 (+)
CAST/EiJ	MGP_CASTEiJ_G0035952	sense overlapping lncRNA gene	Chr1:41279719-41333106 (+)
CBA/J	MGP_CBAJ_G0036740	sense overlapping lncRNA gene	Chr1:44639399-44700657 (+)
DBA/2J	MGP_DBA2J_G0036915	sense overlapping lncRNA gene	Chr1:39675146-39726328 (+)
FVB/NJ	MGP_FVBNJ_G0036865	sense overlapping lncRNA gene	Chr1:39206032-39255435 (+)
LP/J	MGP_LPJ_G0036962	sense overlapping lncRNA gene	Chr1:41985822-42041004 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036873	sense overlapping lncRNA gene	Chr1:46620731-46673613 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037709	sense overlapping lncRNA gene	Chr1:41123845-41179449 (+)
PWK/PhJ	MGP_PWKPhJ_G0035646	sense overlapping lncRNA gene	Chr1:39535940-39595291 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035454	sense overlapping lncRNA gene	Chr1:41120545-41175881 (+)
WSB/EiJ	MGP_WSBEiJ_G0036154	sense overlapping lncRNA gene	Chr1:41164539-41218397 (+)

Homology

• Gene Tree
  Gm20646
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm20646
• Find Mice (IMSR)
  1 strains or lines available
• Comparison Matrix
  Gene Expression + Phenotype

Expression

• Assay Results
  706

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  3

• Ensembl
  ENSMUSG00000093436 (Evidence)
• NCBI Gene
  108167623

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093436	Ensembl Gene Model | MGI Sequence Detail	49867	C57BL/6J
transcript	ENSMUST00000176807	Ensembl | MGI Sequence Detail	1316	Not Applicable

Other
Accession IDs

MGI:5825728

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Gm20646:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6509	Chr1:42734053-42734102 (+)	-7 bp
Tssr6510	Chr1:42734108-42734142 (+)	40 bp