Gm46733 Gene Detail

Summary

• Symbol
  Gm46733
• Name
  predicted gene, 46733

• Feature Type
  lncRNA gene
• IDs
  MGI:5826370
  NCBI Gene: 108168743
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr2:34852691-34853317 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826370	lncRNA gene	Chr2:34852691-34853317 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  108168743

Representative Sequences			Length	Strain/Species
genomic	108168743	NCBI Gene Model | MGI Sequence Detail	627	C57BL/6J
transcript	XR_001783275	RefSeq | MGI Sequence Detail	521	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm46733:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17440	Chr2:34851014-34851040 (+)	-1,664 bp
Tssr17441	Chr2:34851413-34851429 (+)	-1,270 bp
Tssr17442	Chr2:34851695-34851710 (+)	-988 bp
Tssr17443	Chr2:34851714-34851729 (+)	-969 bp
Tssr17444	Chr2:34851731-34851764 (+)	-943 bp
Tssr17445	Chr2:34851896-34851908 (+)	-789 bp
Tssr477	Chr2:34853174-34853179 (+)	486 bp
Tssr17446	Chr2:34853182-34853214 (+)	507 bp
Tssr17447	Chr2:34853218-34853227 (+)	532 bp