Gm46781 Gene Detail

Summary

• Symbol
  Gm46781
• Name
  predicted gene, 46781

• Feature Type
  lncRNA gene
• IDs
  MGI:5826418
  NCBI Gene: 108168823
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr2:174444605-174455238 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  379 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826418	lncRNA gene	Chr2:174444605-174455931 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm46781
  

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000119943 (Evidence)
• NCBI Gene
  108168823

Representative Sequences			Length	Strain/Species
genomic	108168823	NCBI Gene Model | MGI Sequence Detail	10634	C57BL/6J
transcript	XR_004940802	RefSeq | MGI Sequence Detail	2619	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46781:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28041	Chr2:174456165-174456177 (-)	-933 bp
Tssr28040	Chr2:174456138-174456163 (-)	-913 bp
Tssr28039	Chr2:174455880-174455906 (-)	-655 bp
Tssr28038	Chr2:174455836-174455853 (-)	-607 bp
Tssr28037	Chr2:174455820-174455827 (-)	-586 bp