Gm47289 Gene Detail

Summary

• Symbol
  Gm47289
• Name
  predicted gene, 47289

• Feature Type
  lncRNA gene
• IDs
  MGI:6096143
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:118988229-118990737 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096143	lncRNA gene	Chr9:118988229-118990737 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0035413	protein coding gene	Chr9:121880681-121883171 (+)
A/J	MGP_AJ_G0035393	protein coding gene	Chr9:117376198-117378672 (+)
AKR/J	MGP_AKRJ_G0035326	protein coding gene	Chr9:120416775-120419234 (+)
BALB/cJ	MGP_BALBcJ_G0035389	protein coding gene	Chr9:117245864-117248346 (+)
C3H/HeJ	MGP_C3HHeJ_G0035097	protein coding gene	Chr9:120886922-120889394 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035912	protein coding gene	Chr9:125229956-125232438 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0034401	protein coding gene	Chr9:120851115-120853612 (+)
CBA/J	MGP_CBAJ_G0035064	protein coding gene	Chr9:129929424-129931902 (+)
DBA/2J	MGP_DBA2J_G0035223	protein coding gene	Chr9:116814687-116817189 (+)
FVB/NJ	MGP_FVBNJ_G0035170	protein coding gene	Chr9:115658272-115660758 (+)
LP/J	MGP_LPJ_G0035302	protein coding gene	Chr9:122229239-122231717 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035211	protein coding gene	Chr9:130913175-130915663 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035931	protein coding gene	Chr9:120804814-120807306 (+)
PWK/PhJ	MGP_PWKPhJ_G0034107	protein coding gene	Chr9:117227969-117230523 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033942	protein coding gene	Chr9:120922506-120924943 (+)
WSB/EiJ	MGP_WSBEiJ_G0034522	protein coding gene	Chr9:120691470-120693966 (+)

Homology

• Gene Tree
  Gm47289
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000074029 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074029	Ensembl Gene Model | MGI Sequence Detail	2509	C57BL/6J
transcript	ENSMUST00000093527	Ensembl | MGI Sequence Detail	2509	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;