Gm49885 Gene Detail

Summary

• Symbol
  Gm49885
• Name
  predicted gene, 49885

• Feature Type
  lncRNA gene
• IDs
  MGI:6270568
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:41058521-41068917 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  446 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270568	lncRNA gene	Chr6:41058521-41068917 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037116	sense overlapping lncRNA gene	Chr6:39556711-39568481 (+)
A/J	MGP_AJ_G0037103	sense overlapping lncRNA gene	Chr6:37835313-37845825 (+)
AKR/J	MGP_AKRJ_G0037051	sense overlapping lncRNA gene	Chr6:39036661-39046958 (+)
BALB/cJ	MGP_BALBcJ_G0037094	sense overlapping lncRNA gene	Chr6:38047895-38058221 (+)
C3H/HeJ	MGP_C3HHeJ_G0036781	sense overlapping lncRNA gene	Chr6:39058908-39069174 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037608	sense overlapping lncRNA gene	Chr6:40548171-40558460 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034651	sense overlapping lncRNA gene	Chr6:35626996-35633955 (+)
CAST/EiJ	MGP_CASTEiJ_G0035968	sense overlapping lncRNA gene	Chr6:38958566-38963757 (+)
CBA/J	MGP_CBAJ_G0036756	sense overlapping lncRNA gene	Chr6:42176943-42187996 (+)
DBA/2J	MGP_DBA2J_G0036931	sense overlapping lncRNA gene	Chr6:37649659-37660398 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0036978	sense overlapping lncRNA gene	Chr6:39567671-39577982 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036889	sense overlapping lncRNA gene	Chr6:44424718-44439262 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037725	sense overlapping lncRNA gene	Chr6:39001479-39011798 (+)
PWK/PhJ	MGP_PWKPhJ_G0035662	sense overlapping lncRNA gene	Chr6:37276804-37284344 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0036170	sense overlapping lncRNA gene	Chr6:38944492-38954743 (+)

Homology

• Gene Tree
  Gm49885
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000103833 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103833	Ensembl Gene Model | MGI Sequence Detail	10397	C57BL/6J
transcript	ENSMUST00000191867	Ensembl | MGI Sequence Detail	620	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;