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Cyp2d9 Gene Detail
Summary
  • Symbol
    Cyp2d9
  • Name
    cytochrome P450, family 2, subfamily d, polypeptide 9
  • Synonyms
    Cyp2d, P450-2D, testosterone 16alpha-hydroxylase
  • Feature Type
    protein coding gene
  • IDs
    MGI:88606
    NCBI Gene: 13105
  • Member of
    Cyp2d cluster
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:82336578-82341028 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 38.60 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    254 from dbSNP Build 142
  • Strain Annotations
    10
  • RFLP
    2
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_88606
 protein coding gene Chr15:82317638-82341046 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022149
 protein coding gene Chr15:82972140-82980831 (+)
A/J MGP_AJ_G0022108
 protein coding gene Chr15:80144567-80148902 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0022114
 protein coding gene Chr15:80240329-80244664 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0022558
 protein coding gene Chr15:86246307-86249663 (+)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0021850
 protein coding gene Chr15:88938335-88955278 (+)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0021956
 protein coding gene Chr15:78520515-78527440 (-)
LP/J MGP_LPJ_G0022048
 protein coding gene Chr15:83135682-83140132 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021977
 protein coding gene Chr15:93848908-93853222 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022573
 protein coding gene Chr15:82484202-82488537 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CYP2D6, cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene)
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CYP2D6, cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene)
  • Synonyms
    CPD6, CYP2D, CYP2D7AP, CYP2D7BP, CYP2D7P2, CYP2D8P2, CYP2DL1, CYPIID6, P450C2D, P450-DB1, P450DB1
  • Links
    NCBI Gene ID: 1565
    neXtProt AC: NX_P10635
    UniProt: P10635

  • Chr Location
    22q13.2; chr22:42126499-42130865 (-)  GRCh38
  • Human Ortholog
    CYP2D7, cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)
  • Synonyms
    CYP2D, CYP2D@, CYP2D6, CYP2D7AP, CYP2D7P, CYP2D7P1, P450C2D, P450DB1, RNA40057
  • Links
    NCBI Gene ID: 1564
    neXtProt AC: NX_A0A087X1C5
    UniProt: A0A087X1C5

  • Chr Location
    22q13.2; chr22:42139576-42149455 (-)  GRCh38
Human Diseases
more
  • Diseases
    9 with human CYP2D6 associations

Human Disease Mouse Models
      
IDs
IDs
IDs
IDs
IDs
IDs
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    22
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    846
  • Tissues
    107
  • cDNA Data
    309
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 13105 NCBI Gene Model | MGI Sequence Detail 4451 C57BL/6J ±  kb
transcript NM_010006 RefSeq | MGI Sequence Detail 1651 ZRU/MplStud  
polypeptide P11714 UniProt | EBI | MGI Sequence Detail 504 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 314
    Genomic 3
    cDNA 309
    Primer pair 2

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-13111, MGD-MRK-2325
References
more
  • Summaries
    All 66
    Developmental Gene Expression 5
    Diseases 1
    Gene Ontology 7
    Phenotypes 23
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:286122 Henderson CJ, et al., An Extensively Humanized Mouse Model to Predict Pathways of Drug Disposition and Drug/Drug Interactions, and to Facilitate Design of Clinical Trials. Drug Metab Dispos. 2019 Jun;47(6):601-615
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory