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Snu13 Gene Detail
Summary
  • Symbol
    Snu13
  • Name
    SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)
  • Synonyms
    FA-1, Fertilization antigen-1, Fta1, Nhp2l1, Ssfa1
  • Feature Type
    protein coding gene
  • IDs
    MGI:893586
    NCBI Gene: 20826
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:81925546-81931799 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 38.38 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    256 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_893586
 protein coding gene Chr15:81924726-81931799 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022131
 protein coding gene Chr15:82527652-82532181 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0022067
 protein coding gene Chr15:81805814-81810317 (-)
BALB/cJ MGP_BALBcJ_G0022097
 protein coding gene Chr15:79654052-79658632 (-)
C3H/HeJ MGP_C3HHeJ_G0021868
 protein coding gene Chr15:81829684-81834186 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022540
 protein coding gene Chr15:85761250-85765794 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020069
 protein coding gene Chr15:76047861-76053858 (-)
CAST/EiJ MGP_CASTEiJ_G0021388
 protein coding gene Chr15:82622067-82626598 (-)
CBA/J MGP_CBAJ_G0021833
 protein coding gene Chr15:88433841-88438361 (-)
DBA/2J MGP_DBA2J_G0025666
 protein coding gene Chr2:68359534-68361958 (-)
FVB/NJ MGP_FVBNJ_G0023436
 protein coding gene Chr17:33494940-33496036 (+)
LP/J MGP_LPJ_G0022030
 protein coding gene Chr15:82670789-82675329 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025659
 protein coding gene Chr2:78369819-78370843 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025838
 protein coding gene Chr2:12023967-12025061 (-)
PWK/PhJ MGP_PWKPhJ_G0021130
 protein coding gene Chr15:79130699-79136972 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020969
 protein coding gene Chr15:81707737-81712015 (-)
WSB/EiJ MGP_WSBEiJ_G0030392
 protein coding gene Chr6:124153968-124155031 (+)



Homology
more
  • Human Ortholog
    SNU13, small nuclear ribonucleoprotein 13
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNU13, small nuclear ribonucleoprotein 13
  • Synonyms
    15.5K, FA-1, FA1, NHP2L1, NHPX, OTK27, SNRNP15-5, SPAG12, SSFA1
  • Links
    NCBI Gene ID: 4809
    neXtProt AC: NX_P55769
    UniProt: P55769

  • Chr Location
    22q13.2; chr22:41673933-41690504 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    26 phenotype references
  • All Mutations and Alleles
    24
  • Chemically induced (other)
    1
  • Gene trapped
    20
  • Radiation induced
    2
  • Targeted
    1
  • Genomic Mutations
    3 involving Snu13
  • Incidental Mutations
    CvDC
  • Find Mice (IMSR)
    14 strains or lines available
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    33
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    213
  • Literature Summary
    2
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 20826 NCBI Gene Model | MGI Sequence Detail 6254 C57BL/6J ±  kb
transcript NM_011482 RefSeq | MGI Sequence Detail 1257 ZRU/MplStud  
polypeptide Q9D0T1 UniProt | EBI | MGI Sequence Detail 128 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000011203 NHP2-like protein 1
    (term hierarchy)
  • InterPro Domains
    IPR050257 Eukaryotic ribosomal RNA-processing and assembly protein
    IPR002415 H/ACA ribonucleoprotein complex, subunit Nhp2-like
    IPR004037 Large ribosomal subunit protein eL8-like, conserved site
    IPR029064 Ribosomal protein eL30-like superfamily
    IPR004038 Ribosomal protein eL8/eL30/eS12/Gadd45
    IPR018492 Ribosomal protein eL8/Nhp2 family
Molecular
Reagents
less
  • All nucleic 213
    cDNA 213

    Microarray probesets 7
References
more
  • Summaries
    All 54
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 6
    Phenotypes 26
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:286260 Wang X, et al., LARP7-Mediated U6 snRNA Modification Ensures Splicing Fidelity and Spermatogenesis in Mice. Mol Cell. 2020 Mar 5;77(5):999-1013.e6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory