Gad1-ps Pseudogene Detail

Summary

• Symbol
  Gad1-ps
• Name
  glutamate decarboxylase 1, pseudogene
• Synonyms
  Gad-1ps

• Feature Type
  pseudogene
• IDs
  MGI:95633
  NCBI Gene: 382407
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:99279906-99281681 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 51.14 cM, cytoband C3-D2
• Mapping Data
  20 experiments

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_95633	pseudogene	Chr10:99279700-99282891 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017687	protein coding gene	Chr10:101272833-101276110 (+)
A/J	MGP_AJ_G0017666	protein coding gene	Chr10:97606022-97609299 (+)
AKR/J	MGP_AKRJ_G0017626	protein coding gene	Chr10:100421376-100424657 (+)
BALB/cJ	MGP_BALBcJ_G0017630	protein coding gene	Chr10:97900537-97903814 (+)
C3H/HeJ	MGP_C3HHeJ_G0017453	protein coding gene	Chr10:100430143-100433423 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0018086	protein coding gene	Chr10:104789103-104792380 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015766	protein coding gene	Chr10:93034131-93037399 (+)
CAST/EiJ	MGP_CASTEiJ_G0017016	protein coding gene	Chr10:100513422-100516725 (+)
CBA/J	MGP_CBAJ_G0017422	protein coding gene	Chr10:108870772-108874052 (+)
DBA/2J	MGP_DBA2J_G0017528	protein coding gene	Chr10:96689049-96692326 (+)
FVB/NJ	MGP_FVBNJ_G0017521	protein coding gene	Chr10:95903199-95906479 (+)
LP/J	MGP_LPJ_G0017602	protein coding gene	Chr10:101866622-101869899 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017551	protein coding gene	Chr10:110140655-110143935 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018124	protein coding gene	Chr10:100345546-100348824 (+)
PWK/PhJ	MGP_PWKPhJ_G0016798	protein coding gene	Chr10:96828565-96831955 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0016587	protein coding gene	Chr10:99236642-99239625 (+)
WSB/EiJ	MGP_WSBEiJ_G0017076	protein coding gene	Chr10:100332322-100335602 (+)

Homology

• Gene Tree
  Gad1-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gad1-ps
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  27 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000090665 (Evidence)
• NCBI Gene
  382407

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090665	Ensembl Gene Model | MGI Sequence Detail	1776	C57BL/6J
transcript	ENSMUST00000167243	Ensembl | MGI Sequence Detail	1776	Not Applicable

Molecular
Reagents

• All nucleic 8

  Genomic 2

  cDNA 6

Other
Accession IDs

MGD-MRK-9954, MGD-MRK-9958

References

• Summaries
  All 26

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gad1-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95551	Chr10:99279561-99279595 (+)	-328 bp
Tssr3335	Chr10:99279731-99279740 (+)	-170 bp