About   Help   FAQ
Gata1 Gene Detail
Summary
  • Symbol
    Gata1
  • Name
    GATA binding protein 1
  • Synonyms
    Gata-1, Gf-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:95661
    NCBI Gene: 14460
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:7825504-7842844 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 3.59 cM, cytoband A2
  • Mapping Data
    19 experiments
Strain
Comparison
more
  • SNPs within 2kb
    492 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_95661
 protein coding gene ChrX:7825499-7844310 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035536
 protein coding gene ChrX:2588190-2608483 (-)
A/J MGP_AJ_G0035513
 protein coding gene ChrX:2544567-2563908 (-)
AKR/J MGP_AKRJ_G0035446
 protein coding gene ChrX:2666200-2687043 (-)
BALB/cJ MGP_BALBcJ_G0035510
 protein coding gene ChrX:2571548-2591075 (-)
C3H/HeJ MGP_C3HHeJ_G0035218
 protein coding gene ChrX:2636183-2656106 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036034
 protein coding gene ChrX:2675606-2694354 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032909
 protein coding gene ChrX:2105046-2122864 (-)
CAST/EiJ MGP_CASTEiJ_G0034519
 protein coding gene ChrX:2529231-2548995 (-)
CBA/J MGP_CBAJ_G0035188
 protein coding gene ChrX:2801269-2823544 (-)
DBA/2J MGP_DBA2J_G0035345
 protein coding gene ChrX:2566709-2585494 (-)
FVB/NJ MGP_FVBNJ_G0035292
 protein coding gene ChrX:2528328-2547336 (-)
LP/J MGP_LPJ_G0035422
 protein coding gene ChrX:2610384-2628927 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035332
 protein coding gene ChrX:2763605-2783373 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036052
 protein coding gene ChrX:2573354-2593114 (-)
PWK/PhJ MGP_PWKPhJ_G0034219
 protein coding gene ChrX:2498260-2517395 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034058
 protein coding gene ChrX:2549357-2568082 (-)
WSB/EiJ MGP_WSBEiJ_G0034642
 protein coding gene ChrX:2582242-2602748 (-)



Homology
more
  • Human Ortholog
    GATA1, GATA binding protein 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GATA1, GATA binding protein 1
  • Synonyms
    CNSHA9, ERYF1, GATA-1, GF-1, GF1, HAEADA, NF-E1, NFE1, XLANP, XLTDA, XLTT
  • Links
    NCBI Gene ID: 2623
    neXtProt AC: NX_P15976
    UniProt: P15976

  • Chr Location
    Xp11.23; chrX:48786540-48794311 (+)  GRCh38
Human Diseases
more
  • Diseases
    3 with Gata1 mouse models; 8 with human GATA1 associations

Human Disease Mouse Models
      
IDs
 View 1 model
      
IDs
 View 1 model
IDs
 View 2 models
      
IDs
IDs
IDs
IDs
IDs
 View 2 models
IDs
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    3 with disease annotations
  • References
    4 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    87 phenotypes from 19 alleles in 21 genetic backgrounds
    21 phenotypes from multigenic genotypes
    4 images
    203 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mutation of this locus affects hematopoiesis. Most hemizygous mutant males mice die at mid-gestation and exhibit blocked erythroid development. Female null and hypomorphic mutants survive birth but exhibit varying degrees of anemia and impaired hematopoiesis.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    128
  • GO References
    52
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1198
  • Tissues
    254
  • cDNA Data
    30
  • Literature Summary
    146
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 14460 NCBI Gene Model | MGI Sequence Detail 17341 C57BL/6J ±  kb
    transcript NM_001410603 RefSeq | MGI Sequence Detail 1979 ZRU/MplStud  
    polypeptide P17679 UniProt | EBI | MGI Sequence Detail 413 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 79
      Genomic 5
      cDNA 32
      Primer pair 34
      Other 8

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-10002, MGD-MRK-10054, MGD-MRK-9998
    References
    more
    • Summaries
      All 496
      Developmental Gene Expression 146
      Diseases 4
      Gene Ontology 52
      Phenotypes 203
    • Earliest
      J:9808 Tsai SF, et al., Cloning of cDNA for the major DNA-binding protein of the erythroid lineage through expression in mammalian cells. Nature. 1989 Jun 8;339(6224):446-51
    • Latest
      J:358143 Rao Z, et al., Alarmin-loaded extracellular lipid droplets induce airway neutrophil infiltration during type 2 inflammation. Immunity. 2024 Sep 25;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory