Ldha-ps Pseudogene Detail

Summary

• Symbol
  Ldha-ps
• Name
  lactate dehydrogenase A, pseudogene
• Synonyms
  Ldh-1ps

• Feature Type
  pseudogene
• IDs
  MGI:96760
  NCBI Gene: 16829
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:59964399-59965393 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 34.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96760	pseudogene	Chr2:59964315-59965878 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011662	pseudogene	Chr2:59708225-59709219 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0011625	pseudogene	Chr2:58972980-58973974 (+)
BALB/cJ	MGP_BALBcJ_G0011641	pseudogene	Chr2:57511375-57512369 (+)
C3H/HeJ	MGP_C3HHeJ_G0011527	pseudogene	Chr2:59084409-59085848 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011933	pseudogene	Chr2:61471213-61472207 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011498	pseudogene	Chr2:63799246-63800240 (+)
DBA/2J	MGP_DBA2J_G0011554	pseudogene	Chr2:57010634-57011628 (+)
FVB/NJ	MGP_FVBNJ_G0011556	pseudogene	Chr2:56560888-56561882 (+)
LP/J	MGP_LPJ_G0011620	pseudogene	Chr2:59560790-59561784 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011555	pseudogene	Chr2:65418112-65419106 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011925	pseudogene	Chr2:59002850-59003844 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Ldha-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Ldha-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000082330 (Evidence)
• NCBI Gene
  16829

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082330	Ensembl Gene Model | MGI Sequence Detail	995	C57BL/6J
transcript	ENSMUST00000119390	Ensembl | MGI Sequence Detail	995	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 2

Other
Accession IDs

MGD-MRK-11763, MGD-MRK-11769

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:9098 Fukasawa KM, et al., Molecular evolution of mammalian lactate dehydrogenase-A genes and pseudogenes: association of a mouse processed pseudogene with a B1 repetitive sequence. Mol Biol Evol. 1986 Jul;3(4):330-42
• Latest
  J:8625 Fukasawa KM, et al., Molecular nature of spontaneous mutations in mouse lactate dehydrogenase-A processed pseudogenes. Genetics. 1987 Jan;115(1):177-84