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Rab1a Gene Detail
Summary
  • Symbol
    Rab1a
  • Name
    RAB1A, member RAS oncogene family
  • Synonyms
    Gtbp, mKIAA3012, Rab-1, Rab1, ras-related YPT1 protein, Ypt1
  • Feature Type
    protein coding gene
  • IDs
    MGI:97842
    NCBI Gene: 19324
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:20151432-20176856 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 12.92 cM
  • Mapping Data
    10 experiments
Strain
Comparison
more
  • SNPs within 2kb
    557 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    2
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_97842
 protein coding gene Chr11:20151412-20176856 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018064
 protein coding gene Chr11:17698616-17727413 (+)
A/J MGP_AJ_G0018037
 protein coding gene Chr11:17122901-17148566 (+)
AKR/J MGP_AKRJ_G0018001
 protein coding gene Chr11:17728805-17755194 (+)
BALB/cJ MGP_BALBcJ_G0018005
 protein coding gene Chr11:17237712-17264592 (+)
C3H/HeJ MGP_C3HHeJ_G0017819
 protein coding gene Chr11:17617626-17642827 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018457
 protein coding gene Chr11:18507970-18535929 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016115
 protein coding gene Chr11:16107010-16130078 (+)
CAST/EiJ MGP_CASTEiJ_G0017380
 protein coding gene Chr11:17584164-17609979 (+)
CBA/J MGP_CBAJ_G0017793
 protein coding gene Chr11:19320256-19353175 (+)
DBA/2J MGP_DBA2J_G0017903
 protein coding gene Chr11:17068293-17093631 (+)
FVB/NJ MGP_FVBNJ_G0017895
 protein coding gene Chr11:16806109-16831248 (+)
LP/J MGP_LPJ_G0017974
 protein coding gene Chr11:17885100-17910493 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017921
 protein coding gene Chr11:19764846-19790997 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018498
 protein coding gene Chr11:17806246-17833641 (+)
PWK/PhJ MGP_PWKPhJ_G0017160
 protein coding gene Chr11:17074995-17099207 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016958
 protein coding gene Chr11:17535102-17562070 (+)
WSB/EiJ MGP_WSBEiJ_G0017434
 protein coding gene Chr11:17470434-17496337 (+)



Homology
more
  • Human Ortholog
    RAB1A, RAB1A, member RAS oncogene family
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAB1A, RAB1A, member RAS oncogene family
  • Synonyms
    RAB1, YPT1
  • Links
    NCBI Gene ID: 5861
    neXtProt AC: NX_P62820
    UniProt: P62820

  • Chr Location
    2p14; chr2:65070696-65130331 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Rab1a mouse models

Human Disease Mouse Models
      
IDs
 View 3 models
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    3 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotypes from 5 alleles in 3 genetic backgrounds
    20 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit complete embryonic lethality during organogenesis.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    56
  • GO References
    13
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    734
  • Tissues
    18
  • cDNA Data
    18
  • Literature Summary
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000020149 Ensembl Gene Model | MGI Sequence Detail 25425 C57BL/6J ±  kb
    transcript ENSMUST00000163483 Ensembl | MGI Sequence Detail 2657 Not Applicable  
    polypeptide ENSMUSP00000127330 Ensembl | MGI Sequence Detail 205 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 29
      Genomic 5
      cDNA 21
      Primer pair 2
      Other 1

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGD-MRK-10329, MGD-MRK-13744, MGD-MRK-13745, MGD-MRK-15847
    References
    more
    • Summaries
      All 81
      Developmental Gene Expression 8
      Diseases 1
      Gene Ontology 13
      Phenotypes 20
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory