Snord14c Gene Detail

Summary

• Symbol
  Snord14c
• Name
  small nucleolar RNA, C/D box 14C
• Synonyms
  Gm23107, Rnu14, U14

• Feature Type
  snoRNA gene
• IDs
  MGI:97971
  NCBI Gene: 108637
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:40714879-40714964 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 21.55 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97971	snoRNA gene	Chr9:40714879-40714965 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Snord14c
  

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• Ensembl
  ENSMUSG00000119805 (Evidence)
• NCBI Gene
  108637

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119805	Ensembl Gene Model | MGI Sequence Detail	86	C57BL/6J
transcript	ENSMUST00000083424	Ensembl | MGI Sequence Detail	86	Not Applicable

Molecular
Reagents

• All nucleic 5

  Genomic 5

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-13964, MGI:5452884

References

• Summaries
  All 10
• Earliest
  J:10873 Liu J, et al., Mouse U14 snRNA is encoded in an intron of the mouse cognate hsc70 heat shock gene. Nucleic Acids Res. 1990 Nov 25;18(22):6565-71
• Latest
  J:58471 Eliceiri GL, Small nucleolar RNAs. Cell Mol Life Sci. 1999;56:22-31

TSS for Snord14c:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84484	Chr9:40713921-40713952 (+)	-942 bp