Snord3a Gene Detail

Summary

• Symbol
  Snord3a
• Name
  small nucleolar RNA, C/D box 3A
• Synonyms
  Rnu3a

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:97977
  NCBI Gene: 19850
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:40134464-40134675 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 21.81 cM, cytoband B2-B4
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97977	snoRNA gene	Chr10:40134463-40134676 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038495	snoRNA gene	Chr10:38806628-38806840 (+)
A/J	MGP_AJ_G0038485	snoRNA gene	Chr10:37764920-37765132 (+)
AKR/J	MGP_AKRJ_G0038423	snoRNA gene	Chr10:38296243-38296455 (+)
BALB/cJ	MGP_BALBcJ_G0038472	snoRNA gene	Chr10:37833677-37833889 (+)
C3H/HeJ	MGP_C3HHeJ_G0038135	snoRNA gene	Chr10:38627104-38627316 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039010	snoRNA gene	Chr10:40013284-40013496 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035790	snoRNA gene	Chr10:35734582-35734794 (+)
CAST/EiJ	MGP_CASTEiJ_G0037280	snoRNA gene	Chr10:38808798-38809010 (+)
CBA/J	MGP_CBAJ_G0038107	snoRNA gene	Chr10:41847522-41847734 (+)
DBA/2J	MGP_DBA2J_G0038298	snoRNA gene	Chr10:37283360-37283572 (+)
FVB/NJ	MGP_FVBNJ_G0038247	snoRNA gene	Chr10:36781702-36781914 (+)
LP/J	MGP_LPJ_G0038337	snoRNA gene	Chr10:38786623-38786835 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038247	snoRNA gene	Chr10:42685153-42685365 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039118	snoRNA gene	Chr10:38282329-38282541 (+)
PWK/PhJ	MGP_PWKPhJ_G0036965	snoRNA gene	Chr10:37151558-37151770 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036721	snoRNA gene	Chr10:38112672-38112884 (+)
WSB/EiJ	MGP_WSBEiJ_G0037511	snoRNA gene	Chr10:38583344-38583556 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000106147 (Evidence), ENSMUSG00002074875 (Evidence)
• NCBI Gene
  19850

Representative Sequences			Length	Strain/Species
genomic	19850	NCBI Gene Model | MGI Sequence Detail	212	C57BL/6J
transcript	NR_002842	RefSeq | MGI Sequence Detail	212	C57BL/6

Molecular
Reagents

• All nucleic 4

  Genomic 3

  Other 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-13975, MGI:6434247

References

• Summaries
  All 11

  Gene Ontology 1

  Phenotypes 1
• Earliest
  J:10592 Mazan S, et al., Presence of a differentially expressed U3A RNA variant in mouse. Structure and evolutive implications. FEBS Lett. 1990 Jul 2;267(1):121-5
• Latest
  J:190322 Archambaud C, et al., Impact of lactobacilli on orally acquired listeriosis. Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):16684-9

TSS for Snord3a:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93011	Chr10:40133704-40133731 (+)	-746 bp
Tssr93012	Chr10:40134459-40134466 (+)	-1 bp