Thbs3 MGI Mouse Gene Detail - MGI:98739

Symbol

Thbs3
Name

thrombospondin 3
Synonyms

Thbs-3, TSP3

Feature Type

protein coding gene
IDs

MGI:98739
NCBI Gene: 21827
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr3:89122487-89134144 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 39.01 cM, cytoband E3-F1
Mapping Data

8 experiments

SNPs within 2kb

273 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_98739	protein coding gene	Chr3:89122470-89134148 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0027423	protein coding gene	Chr3:89415649-89428066 (+)
A/J	MGP_AJ_G0027387	protein coding gene	Chr3:86455027-86472009 (+)
AKR/J	MGP_AKRJ_G0027351	protein coding gene	Chr3:88550956-88562482 (+)
BALB/cJ	MGP_BALBcJ_G0027396	protein coding gene	Chr3:86424096-86435689 (+)
C3H/HeJ	MGP_C3HHeJ_G0027138	protein coding gene	Chr3:88749820-88763080 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0027842	protein coding gene	Chr3:92800218-92813045 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025194	protein coding gene	Chr3:81940027-81951855 (+)
CAST/EiJ	MGP_CASTEiJ_G0026584	protein coding gene	Chr3:89100605-89113576 (+)
CBA/J	MGP_CBAJ_G0027112	protein coding gene	Chr3:95981768-95993301 (+)
DBA/2J	MGP_DBA2J_G0027250	protein coding gene	Chr3:85838801-85850379 (+)
FVB/NJ	MGP_FVBNJ_G0027218	protein coding gene	Chr3:84177853-84191302 (+)
LP/J	MGP_LPJ_G0027359	protein coding gene	Chr3:90496568-90508964 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027238	protein coding gene	Chr3:102201075-102213724 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0027901	protein coding gene	Chr3:88301053-88313838 (+)
PWK/PhJ	MGP_PWKPhJ_G0026318	protein coding gene	Chr3:85711498-85722987 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0026137	protein coding gene	Chr3:87472035-87483506 (+)
WSB/EiJ	MGP_WSBEiJ_G0026666	protein coding gene	Chr3:88692681-88705190 (+)

Human Ortholog

THBS3, thrombospondin 3

Vertebrate Orthologs

4

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

THBS3, thrombospondin 3
Synonyms

TSP3
Links

HGNC:11787

NCBI Gene ID: 7059

neXtProt AC: NX_P49746

UniProt: P49746
Chr Location

1q22; chr1:155195588-155209178 (-) GRCh38

MGI Vertebrate Homology

Thbs3 stringent orthology
1 human;1 mouse;1 rat;2 zebrafish
HCOP

vertebrate homology predictions: THBS3
Gene Tree

Thbs3

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References

1 with disease annotations

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Phenotype Summary

3 phenotypes from 1 allele in 1 genetic background
16 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

25
Chemically induced (other)

1
Endonuclease-mediated

2
Gene trapped

17
Radiation induced

1
Targeted

3
Transgenic

1
Genomic Mutations

2 involving Thbs3
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

50 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Homozygous null mice at a young age are heavier and exhibit femurs with increased periosteal and endocortical diameters, greater moments of inertia and increased bending strength and failure loads, with these defects no longer detected in older mice. Femoral heads show accelerated bone ossification.

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All GO Annotations

13
GO References

8

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

869
Tissues

101
cDNA Data

47
Literature Summary

11

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GENSAT

GEO

Expression Atlas
Other Vertebrate Links

Xenbase thbs3

ZFIN thbs3a, thbs3b

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All Sequences

52
RefSeq

5
UniProt

4
CCDS

CCDS17495.1

Ensembl

ENSMUSG00000028047 (Evidence)
NCBI Gene

21827

			Length	Strain/Species	Flank
genomic	ENSMUSG00000028047	Ensembl Gene Model \| MGI Sequence Detail	11658	C57BL/6J	± kb
transcript	ENSMUST00000029682	Ensembl \| MGI Sequence Detail	3190	Not Applicable
polypeptide	ENSMUSP00000029682	Ensembl \| MGI Sequence Detail	956	Not Applicable

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UniProt

4 Sequences
Protein Ontology

PR:000000131 thrombospondin-3

(term hierarchy)
InterPro Domains

IPR013320 Concanavalin A-like lectin/glucanase domain superfamily

IPR018097 EGF-like calcium-binding, conserved site

IPR001881 EGF-like calcium-binding domain

IPR000742 EGF-like domain

IPR049883 NOTCH1 EGF-like calcium-binding domain

IPR028507 Thrombospondin-3, coiled-coil domain

IPR024665 Thrombospondin/cartilage oligomeric matrix protein, coiled-coil domain

IPR046970 Thrombospondin/cartilage oligomeric matrix protein, coiled-coil domain superfamily

IPR008859 Thrombospondin, C-terminal

IPR048287 Thrombospondin-like, N-terminal domain

IPR003367 Thrombospondin, type 3-like repeat

IPR017897 Thrombospondin, type 3 repeat

IPR028974 TSP type-3 repeat
GlyGen

Q05895 4 sites, 2 N-linked glycans (2 sites)

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All nucleic 63

Genomic 15

cDNA 47

Other 1

Microarray probesets 2

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MGD-MRK-15085, MGD-MRK-15088

Summaries

All 56

Developmental Gene Expression 11

Diseases 1

Gene Ontology 8

Phenotypes 16
Earliest

J:8863 Chou HS, et al., Germline organization of the murine T cell receptor beta-chain genes. Science. 1987 Oct 23;238(4826):545-8
Latest

J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for Thbs3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30071	Chr3:89122477-89122488 (+)	-4 bp
Tssr30072	Chr3:89122499-89122550 (+)	38 bp
Tssr30073	Chr3:89132379-89132391 (+)	9,898 bp
Tssr30074	Chr3:89133481-89133503 (+)	11,005 bp
Tssr937	Chr3:89133536-89133575 (+)	11,069 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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