Rn5s-ps1 Pseudogene Detail

Summary

• Symbol
  Rn5s-ps1
• Name
  5S RNA, pseudogene 1
• Synonyms
  5s RNA pseudogene

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:99528
  NCBI Gene: 19805
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:124328311-124328419 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 72.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_99528	pseudogene	Chr8:124328309-124328419 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rn5s-ps1
  

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• Ensembl
  ENSMUSG00000119925 (Evidence)
• NCBI Gene
  19805

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119925	Ensembl Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	ENSMUST00000093696	Ensembl | MGI Sequence Detail	109	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 2

Other
Accession IDs

MGD-MRK-16306

References

• Summaries
  All 6
• Earliest
  J:18337 Hallenberg C, et al., Characterization of 5S rRNA genes from mouse. Gene. 1994 May 16;142(2):291-5