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Rpl29 Gene Detail
Summary
  • Symbol
    Rpl29
  • Name
    ribosomal protein L29
  • Synonyms
    Rpl43
  • Feature Type
    protein coding gene
  • IDs
    MGI:99687
    NCBI Gene: 19944
  • Alliance
  • Transcription Start Sites
    5 TSS
  • Candidate for QTL
    1 QTL
Location &
Maps
more
  • Sequence Map
    Chr9:106306653-106308767 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 9, 57.49 cM, cytoband F2-F4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    218 from dbSNP Build 142
  • Strain Annotations
    7
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_99687
protein coding gene Chr9:106306631-106308768 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035228
protein coding gene Chr9:108238395-108240182 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0035201
protein coding gene Chr9:104011692-104013519 (+)
C3H/HeJ MGP_C3HHeJ_G0034911
protein coding gene Chr9:107336013-107337794 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035721
protein coding gene Chr9:111220006-111221823 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032619
protein coding gene Chr9:101816327-101818428 (+)
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0034343
protein coding gene Chr9:107070624-107072411 (+)



Homology
more
  • Human Ortholog
    RPL29, ribosomal protein L29
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPL29, ribosomal protein L29
  • Synonyms
    eL29, HIP, HUMRPL29, L29, RPL29_3_370, RPL29P10
  • Links
    NCBI Gene ID: 6159
    neXtProt AC: NX_P47914
    UniProt: P47914

  • Chr Location
    3p21.2; chr3:51993522-51995895 (-)  GRCh38

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    8 phenotypes from 2 alleles in 2 genetic backgrounds
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous null mice exhibit a delayed global growth around mid-gestation including delayed digit and incisor formation, low birth weights associated with a proportional reduction in organ and skeletal size, delayed postnatal development and sexual maturation, and significant postnatal lethality.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000048758 Ensembl Gene Model | MGI Sequence Detail 2115 C57BL/6J ±  kb
    transcript ENSMUST00000098994 Ensembl | MGI Sequence Detail 583 Not Applicable  
    polypeptide ENSMUSP00000096592 Ensembl | MGI Sequence Detail 160 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • PDB
    • InterPro Domains
      IPR002673 Large ribosomal subunit protein eL29
    • GlyGen
      P47915 3 sites, 2 N-linked glycans (2 sites), 1 O-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 14
      Genomic 1
      cDNA 13

      Microarray probesets 23
    Other
    Accession IDs
    less
    MGD-MRK-16472
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 6
      Gene Ontology 9
      Phenotypes 12
    • Earliest
      J:18668 Rudert F, et al., Cloning a pseudogene and cDNA encoding a 17-kDa ribosomal protein from mouse: structure and regulation of expression. Gene. 1993 Nov 15;133(2):249-54
    • Latest
      J:333015 Li H, et al., A male germ-cell-specific ribosome controls male fertility. Nature. 2022 Dec;612(7941):725-731

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    last database update
    12/10/2024
    MGI 6.24
    The Jackson Laboratory