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Trappc3 Gene Detail
Summary
  • Symbol
    Trappc3
  • Name
    trafficking protein particle complex 3
  • Synonyms
    1110058K12Rik, Bet3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1351486
    NCBI Gene: 27096
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:126156198-126169676 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 60.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    524 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1351486
 protein coding gene Chr4:126156118-126169676 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028776
 protein coding gene Chr4:127932908-127945988 (+)
A/J MGP_AJ_G0028735
 protein coding gene Chr4:122898553-122912613 (+)
AKR/J MGP_AKRJ_G0028688
 protein coding gene Chr4:126277240-126290416 (+)
BALB/cJ MGP_BALBcJ_G0028758
 protein coding gene Chr4:123475586-123488662 (+)
C3H/HeJ MGP_C3HHeJ_G0028472
 protein coding gene Chr4:126341003-126355089 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029200
 protein coding gene Chr4:132820865-132835842 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026473
 protein coding gene Chr4:116043316-116057284 (+)
CAST/EiJ MGP_CASTEiJ_G0027905
 protein coding gene Chr4:124447440-124464609 (+)
CBA/J MGP_CBAJ_G0028438
 protein coding gene Chr4:136027724-136040788 (+)
DBA/2J MGP_DBA2J_G0028587
 protein coding gene Chr4:123352529-123366163 (+)
FVB/NJ MGP_FVBNJ_G0028554
 protein coding gene Chr4:122006641-122019876 (+)
LP/J MGP_LPJ_G0028688
 protein coding gene Chr4:128219783-128234567 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028580
 protein coding gene Chr4:141055999-141069149 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029238
 protein coding gene Chr4:126628814-126643657 (+)
PWK/PhJ MGP_PWKPhJ_G0027626
 protein coding gene Chr4:119833178-119848165 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027452
 protein coding gene Chr4:122452915-122466911 (+)
WSB/EiJ MGP_WSBEiJ_G0027985
 protein coding gene Chr4:126730059-126745516 (+)



Homology
more
  • Human Ortholog
    TRAPPC3, trafficking protein particle complex subunit 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAPPC3, trafficking protein particle complex subunit 3
  • Synonyms
    BET3
  • Links
    NCBI Gene ID: 27095
    neXtProt AC: NX_O43617
    UniProt: O43617

  • Chr Location
    1p34.3; chr1:36136570-36156053 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    23
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    770
  • Tissues
    8
  • cDNA Data
    80
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 27096 NCBI Gene Model | MGI Sequence Detail 13479 C57BL/6J ±  kb
transcript NM_013718 RefSeq | MGI Sequence Detail 1315 Not Specified  
polypeptide O55013 UniProt | EBI | MGI Sequence Detail 180 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 80
    cDNA 80

    Microarray probesets 4
Other
Accession IDs
less
MGI:1924159, MGI:2140363, MGI:2140447
References
more
  • Summaries
    All 40
    Developmental Gene Expression 2
    Gene Ontology 6
    Phenotypes 9
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:337770 Hu M, et al., Defective neurite elongation and branching in Nibp/Trappc9 deficient zebrafish and mice. Int J Biol Sci. 2023;19(10):3226-3248
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory