Sprr2j-ps Pseudogene Detail

Summary

• Symbol
  Sprr2j-ps
• Name
  small proline-rich protein 2J, pseudogene
• Synonyms
  Sprr2j

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:1330345
  NCBI Gene: 20764
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:92325394-92326703 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.14 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  171 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1330345	pseudogene	Chr3:92325389-92326703 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0027494	protein coding gene	Chr3:92863730-92865044 (+)
A/J	MGP_AJ_G0027461	protein coding gene	Chr3:89940993-89942307 (+)
AKR/J	MGP_AKRJ_G0027426	protein coding gene	Chr3:92048373-92049687 (+)
BALB/cJ	MGP_BALBcJ_G0027470	protein coding gene	Chr3:89754779-89756093 (+)
C3H/HeJ	MGP_C3HHeJ_G0027209	protein coding gene	Chr3:92270032-92271346 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0027913	protein coding gene	Chr3:96401625-96402939 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025264	protein coding gene	Chr3:86587483-86588797 (+)
CAST/EiJ	MGP_CASTEiJ_G0026657	protein coding gene	Chr3:91686620-91687935 (+)
CBA/J	MGP_CBAJ_G0027184	protein coding gene	Chr3:99699222-99700536 (+)
DBA/2J	MGP_DBA2J_G0027321	protein coding gene	Chr3:89261095-89262409 (+)
FVB/NJ	MGP_FVBNJ_G0027289	protein coding gene	Chr3:87434802-87436116 (+)
LP/J	MGP_LPJ_G0027430	protein coding gene	Chr3:94081223-94082537 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027313	protein coding gene	Chr3:105947124-105948438 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0027972	protein coding gene	Chr3:91778631-91779945 (+)
PWK/PhJ	MGP_PWKPhJ_G0026390	protein coding gene	Chr3:89150286-89151600 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0026209	protein coding gene	Chr3:90112892-90114103 (+)
WSB/EiJ	MGP_WSBEiJ_G0026739	protein coding gene	Chr3:92167743-92169057 (+)

Homology

• Gene Tree
  Sprr2j-ps
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  3
• Genomic Mutations
  2 involving Sprr2j-ps
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  6
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000027925 (Evidence)
• NCBI Gene
  20764

Representative Sequences			Length	Strain/Species
genomic	20764	NCBI Gene Model | MGI Sequence Detail	1310	C57BL/6J
transcript	NR_003185	RefSeq | MGI Sequence Detail	673	ZRU/MplStud
polypeptide	O70561	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  Genomic 4

  cDNA 6

  
  

  Microarray probesets 3

References

• Summaries
  All 25

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 7
• Earliest
  J:52302 Song HJ, et al., Mouse Sprr2 genes: a clustered family of genes showing differential expression in epithelial tissues. Genomics. 1999 Jan 1;55(1):28-42
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Sprr2j-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30294	Chr3:92325386-92325395 (+)	-3 bp
Tssr30295	Chr3:92325427-92325440 (+)	40 bp