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Rasgrf1 Gene Detail
Summary
  • Symbol
    Rasgrf1
  • Name
    RAS protein-specific guanine nucleotide-releasing factor 1
  • Synonyms
    CDC25, CDC25Mm, Grf1, Grfbeta
  • Feature Type
    protein coding gene
  • IDs
    MGI:99694
    NCBI Gene: 19417
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:89791961-89909030 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 47.31 cM
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2822 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
    1
  • RFLP
    3
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_99694
 protein coding gene Chr9:89791565-89909032 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035118
 protein coding gene Chr9:90834445-90952763 (+)
A/J MGP_AJ_G0035099
 protein coding gene Chr9:87697624-87814670 (+)
AKR/J MGP_AKRJ_G0035031
 protein coding gene Chr9:89759399-89877211 (+)
BALB/cJ MGP_BALBcJ_G0035091
 protein coding gene Chr9:87344975-87464768 (+)
C3H/HeJ MGP_C3HHeJ_G0034802
 protein coding gene Chr9:90196678-90326647 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035612
 protein coding gene Chr9:93371846-93496568 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032515
 protein coding gene Chr9:85882105-86001053 (+)
CAST/EiJ MGP_CASTEiJ_G0034114
 protein coding gene Chr9:89990193-90108553 (+)
CBA/J MGP_CBAJ_G0034770
 protein coding gene Chr9:96600651-96723648 (+)
DBA/2J MGP_DBA2J_G0034932
 protein coding gene Chr9:87245965-87361711 (+)
FVB/NJ MGP_FVBNJ_G0034878
 protein coding gene Chr9:86268250-86389517 (+)
LP/J MGP_LPJ_G0035011
 protein coding gene Chr9:91062116-91177861 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034919
 protein coding gene Chr9:98222190-98344677 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035632
 protein coding gene Chr9:89984316-90099699 (+)
PWK/PhJ MGP_PWKPhJ_G0033821
 protein coding gene Chr9:87408721-87542069 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033655
 protein coding gene Chr9:90061346-90176854 (+)
WSB/EiJ MGP_WSBEiJ_G0034234
 protein coding gene Chr9:89866011-89987419 (+)



Homology
more
  • Human Ortholog
    RASGRF1, Ras protein specific guanine nucleotide releasing factor 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RASGRF1, Ras protein specific guanine nucleotide releasing factor 1
  • Synonyms
    CDC25, CDC25L, GNRP, GRF1, GRF55, H-GRF55, PP13187, ras-GRF1
  • Links
    NCBI Gene ID: 5923
    neXtProt AC: NX_Q13972
    UniProt: Q13972

  • Chr Location
    15q25.1; chr15:78959906-79090780 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    31 phenotypes from 11 alleles in 13 genetic backgrounds
    1 phenotype from multigenic genotypes
    44 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygotes for null mutations (and heterozygotes with a paternally inherited mutant allele) exhibit reduced postnatal growth, low insulin and IGF I levels, glucose intolerance, beta-cell hypoplasia, impaired long-term synaptic plasticity, and impaired hippocampal-dependent learning.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    33
  • GO References
    14
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    982
  • Tissues
    166
  • cDNA Data
    28
  • Literature Summary
    16
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000032356 Ensembl Gene Model | MGI Sequence Detail 117070 C57BL/6J ±  kb
    transcript ENSMUST00000034912 Ensembl | MGI Sequence Detail 4092 Not Applicable  
    polypeptide ENSMUSP00000034912 Ensembl | MGI Sequence Detail 1262 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • Protein Ontology
      PR:000013756 Ras-specific guanine nucleotide-releasing factor 1
      (term hierarchy)
    • PDB
      2IJE
    • InterPro Domains
      IPR000219 Dbl homology (DH) domain
      IPR035899 Dbl homology (DH) domain superfamily
      IPR001331 Guanine-nucleotide dissociation stimulator, CDC24, conserved site
      IPR011993 PH-like domain superfamily
      IPR001849 Pleckstrin homology domain
      IPR036964 Ras guanine-nucleotide exchange factor, catalytic domain superfamily
      IPR019804 Ras guanine-nucleotide exchange factor, conserved site
      IPR023578 Ras guanine nucleotide exchange factor domain superfamily
      IPR001895 Ras guanine-nucleotide exchange factors catalytic domain
      IPR008937 Ras-like guanine nucleotide exchange factor
      IPR000651 Ras-like guanine nucleotide exchange factor, N-terminal
    • GlyGen
      P27671 5 sites, 3 N-linked glycans (3 sites), 1 O-linked glycan (2 sites)
    Molecular
    Reagents
    less
    • All nucleic 36
      Genomic 4
      cDNA 29
      Primer pair 2
      Other 1

      Microarray probesets 8
    Other
    Accession IDs
    less
    MGD-MRK-16479, MGI:1347052, MGI:2143138
    References
    more
    • Summaries
      All 117
      Developmental Gene Expression 16
      Gene Ontology 14
      Phenotypes 44
    • Earliest
      J:1145 Martegani E, et al., Cloning by functional complementation of a mouse cDNA encoding a homologue of CDC25, a Saccharomyces cerevisiae RAS activator. EMBO J. 1992 Jun;11(6):2151-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory