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Ythdf1 Gene Detail
Summary
  • Symbol
    Ythdf1
  • Name
    YTH N6-methyladenosine RNA binding protein 1
  • Synonyms
    2210410K23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917431
    NCBI Gene: 228994
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:180546170-180562729 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 103.50 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    365 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917431
 protein coding gene Chr2:180546170-180562742 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027004
 protein coding gene Chr2:187470820-187487545 (-)
A/J MGP_AJ_G0026970
 protein coding gene Chr2:179757268-179773858 (-)
AKR/J MGP_AKRJ_G0026940
 protein coding gene Chr2:185147451-185164125 (-)
BALB/cJ MGP_BALBcJ_G0026979
 protein coding gene Chr2:180217549-180235071 (-)
C3H/HeJ MGP_C3HHeJ_G0026720
 protein coding gene Chr2:185505211-185521782 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027425
 protein coding gene Chr2:192872767-192912244 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024790
 protein coding gene Chr2:170445336-170461619 (-)
CAST/EiJ MGP_CASTEiJ_G0026179
 protein coding gene Chr2:183751139-183767698 (-)
CBA/J MGP_CBAJ_G0026697
 protein coding gene Chr2:199869443-199895804 (-)
DBA/2J MGP_DBA2J_G0026835
 protein coding gene Chr2:178850366-178866768 (-)
FVB/NJ MGP_FVBNJ_G0026801
 protein coding gene Chr2:177463115-177479748 (-)
LP/J MGP_LPJ_G0026936
 protein coding gene Chr2:187477061-187495181 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026820
 protein coding gene Chr2:202463821-202481538 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027484
 protein coding gene Chr2:185111638-185128887 (-)
PWK/PhJ MGP_PWKPhJ_G0025915
 protein coding gene Chr2:176375241-176392252 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025715
 protein coding gene Chr2:181601815-181622087 (-)
WSB/EiJ MGP_WSBEiJ_G0026251
 protein coding gene Chr2:186101147-186117626 (-)



Homology
more
  • Human Ortholog
    YTHDF1, YTH N6-methyladenosine RNA binding protein F1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    YTHDF1, YTH N6-methyladenosine RNA binding protein F1
  • Synonyms
    C20orf21, DF1
  • Links
    NCBI Gene ID: 54915
    neXtProt AC: NX_Q9BYJ9
    UniProt: Q9BYJ9

  • Chr Location
    20q13.33; chr20:63195429-63216139 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with human YTHDF1 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    18 phenotypes from 3 alleles in 3 genetic backgrounds
    2 phenotypes from multigenic genotypes
    24 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit learning and memory defects as well as impaired hippocampal synaptic transmission and long-term potentiation.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    36
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    719
  • Tissues
    6
  • cDNA Data
    108
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 228994 NCBI Gene Model | MGI Sequence Detail 16560 C57BL/6J ±  kb
    transcript NM_173761 RefSeq | MGI Sequence Detail 3199 C57BL/6  
    polypeptide P59326 UniProt | EBI | MGI Sequence Detail 559 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 109
      cDNA 108
      Primer pair 1

      Microarray probesets 4
    References
    more
    • Summaries
      All 53
      Developmental Gene Expression 6
      Gene Ontology 8
      Phenotypes 24
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:358428 Wang Y, et al., Progressive polyadenylation and m6A modification of Ighg1 mRNA maintain IgG1 antibody homeostasis in antibody-secreting cells. Immunity. 2024 Nov 12;57(11):2547-2564.e12
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory