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Sparcl1 Gene Detail
Summary
  • Symbol
    Sparcl1
  • Name
    SPARC-like 1
  • Synonyms
    Ecm2, hevin, mast9, Sc1
  • Feature Type
    protein coding gene
  • IDs
    MGI:108110
    NCBI Gene: 13602
  • Alliance
    gene page
  • Transcription Start Sites
    33 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:104226977-104261599 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 50.55 cM, cytoband E4
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1168 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_108110
 protein coding gene Chr5:104226974-104261954 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029809
 protein coding gene Chr5:105747475-105787125 (-)
A/J MGP_AJ_G0029773
 protein coding gene Chr5:101769398-101805551 (-)
AKR/J MGP_AKRJ_G0029721
 protein coding gene Chr5:105054659-105093671 (-)
BALB/cJ MGP_BALBcJ_G0029785
 protein coding gene Chr5:102828614-102866662 (-)
C3H/HeJ MGP_C3HHeJ_G0029508
 protein coding gene Chr5:105463798-105499570 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030240
 protein coding gene Chr5:110073259-110118178 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027475
 protein coding gene Chr5:96901892-96935744 (-)
CAST/EiJ MGP_CASTEiJ_G0028919
 protein coding gene Chr5:104167181-104204780 (-)
CBA/J MGP_CBAJ_G0029478
 protein coding gene Chr5:113902853-113943327 (-)
DBA/2J MGP_DBA2J_G0029622
 protein coding gene Chr5:101957778-101995415 (-)
FVB/NJ MGP_FVBNJ_G0029581
 protein coding gene Chr5:100751350-100787881 (-)
LP/J MGP_LPJ_G0029710
 protein coding gene Chr5:106312876-106351277 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029610
 protein coding gene Chr5:118835314-118871660 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030273
 protein coding gene Chr5:104587675-104622169 (-)
PWK/PhJ MGP_PWKPhJ_G0028637
 protein coding gene Chr5:100416342-100452636 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028472
 protein coding gene Chr5:102244382-102277510 (-)
WSB/EiJ MGP_WSBEiJ_G0028997
 protein coding gene Chr5:104967738-105005004 (-)



Homology
more
  • Human Ortholog
    SPARCL1, SPARC like 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SPARCL1, SPARC like 1
  • Synonyms
    MAST 9, MAST9, PIG33, SC1
  • Links
    NCBI Gene ID: 8404
    neXtProt AC: NX_Q14515
    UniProt: Q14515

  • Chr Location
    4q22.1; chr4:87473335-87531061 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 2 alleles in 3 genetic backgrounds
    1 images
    27 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a targeted null mutation exhibit no discernable phenotype; mice are viable and fertile with normal histology and survival.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    929
  • Tissues
    144
  • cDNA Data
    195
  • Literature Summary
    22
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000029309 Ensembl Gene Model | MGI Sequence Detail 34623 C57BL/6J ±  kb
    transcript ENSMUST00000031249 Ensembl | MGI Sequence Detail 2759 Not Applicable  
    polypeptide ENSMUSP00000031249 Ensembl | MGI Sequence Detail 650 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 207
      Genomic 4
      cDNA 196
      Primer pair 5
      Other 2

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-37147
    References
    more
    • Summaries
      All 84
      Developmental Gene Expression 22
      Gene Ontology 4
      Phenotypes 27
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:349420 Zhao G, et al., Vascular endothelial-derived SPARCL1 exacerbates viral pneumonia through pro-inflammatory macrophage activation. Nat Commun. 2024 May 18;15(1):4235
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory