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Cntn3 Gene Detail
Summary
  • Symbol
    Cntn3
  • Name
    contactin 3
  • Synonyms
    Pang
  • Feature Type
    protein coding gene
  • IDs
    MGI:99534
    NCBI Gene: 18488
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:102140265-102541575 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 47.52 cM
  • Mapping Data
    8 experiments
Strain
Comparison
more
  • SNPs within 2kb
    12530 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
    1
  • RFLP
    3
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_99534
 protein coding gene Chr6:102139616-102550062 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031090
 protein coding gene Chr6:104253276-104676558 (-)
A/J MGP_AJ_G0031059
 protein coding gene Chr6:100269071-100678640 (-)
AKR/J MGP_AKRJ_G0030990
 protein coding gene Chr6:103024407-103440781 (-)
BALB/cJ MGP_BALBcJ_G0031070
 protein coding gene Chr6:100233500-100647255 (-)
C3H/HeJ MGP_C3HHeJ_G0030638
 protein coding gene Chr6:80954524-81384027 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031529
 protein coding gene Chr6:106909252-107337830 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028693
 protein coding gene Chr6:97984870-98281705 (-)
CAST/EiJ MGP_CASTEiJ_G0030177
 protein coding gene Chr6:103316100-103614230 (-)
CBA/J MGP_CBAJ_G0030756
 protein coding gene Chr6:111014667-111487863 (-)
DBA/2J MGP_DBA2J_G0030909
 protein coding gene Chr6:99406598-99818841 (-)
FVB/NJ MGP_FVBNJ_G0030863
 protein coding gene Chr6:98540845-98943525 (-)
LP/J MGP_LPJ_G0030989
 protein coding gene Chr6:104312225-104740207 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030897
 protein coding gene Chr6:114813918-115157710 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031556
 protein coding gene Chr6:102944212-103238876 (-)
PWK/PhJ MGP_PWKPhJ_G0029893
 protein coding gene Chr6:98413985-98704447 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029721
 protein coding gene Chr6:101795132-102121855 (-)
WSB/EiJ MGP_WSBEiJ_G0030261
 protein coding gene Chr6:103448458-103765753 (-)



Homology
more
  • Human Ortholog
    CNTN3, contactin 3
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CNTN3, contactin 3
  • Synonyms
    BIG-1, PANG, PCS
  • Links
    NCBI Gene ID: 5067
    neXtProt AC: NX_Q9P232
    UniProt: Q9P232

  • Chr Location
    3p12.3; chr3:74262568-74614659 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    861
  • Tissues
    108
  • cDNA Data
    15
  • Literature Summary
    10
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 18488 NCBI Gene Model | MGI Sequence Detail 401311 C57BL/6J ±  kb
transcript NM_008779 RefSeq | MGI Sequence Detail 5445 ZRU/MplStud  
polypeptide Q07409 UniProt | EBI | MGI Sequence Detail 1028 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 22
    Genomic 2
    cDNA 16
    Primer pair 2
    Other 2

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-16312
References
more
  • Summaries
    All 46
    Developmental Gene Expression 10
    Gene Ontology 4
    Phenotypes 8
  • Earliest
    J:16948 Connelly MA, et al., PANG, a gene encoding a neuronal glycoprotein, is ectopically activated by intracisternal A-type particle long terminal repeats in murine plasmacytomas. Proc Natl Acad Sci U S A. 1994 Feb 15;91(4):1337-41
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory