Rufy4 MGI Mouse Gene Detail - MGI:3588214 - RUN and FYVE domain containing 4

Symbol

Rufy4
Name

RUN and FYVE domain containing 4
Synonyms

F930048N03Rik

Feature Type

protein coding gene
IDs

MGI:3588214
NCBI Gene: 435626
Alliance

gene page
Transcription Start Sites

1 TSS

Sequence Map

Chr1:74164700-74187382 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 38.38 cM
Mapping Data

1 experiment

SNPs within 2kb

835 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588214	protein coding gene	Chr1:74163768-74187389 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0016140	protein coding gene	Chr1:74707521-74732058 (+)
A/J	MGP_AJ_G0016123	protein coding gene	Chr1:72091824-72114248 (+)
AKR/J	MGP_AKRJ_G0016080	protein coding gene	Chr1:74096607-74120380 (+)
BALB/cJ	MGP_BALBcJ_G0016078	protein coding gene	Chr1:72163015-72183013 (+)
C3H/HeJ	MGP_C3HHeJ_G0015909	protein coding gene	Chr1:74421213-74447055 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016531	protein coding gene	Chr1:77612995-77638551 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014252	protein coding gene	Chr1:67671005-67693159 (+)
CAST/EiJ	MGP_CASTEiJ_G0015493	protein coding gene	Chr1:73730380-73756783 (+)
CBA/J	MGP_CBAJ_G0015882	protein coding gene	Chr1:80119980-80149904 (+)
DBA/2J	MGP_DBA2J_G0015983	protein coding gene	Chr1:71423084-71447695 (+)
FVB/NJ	MGP_FVBNJ_G0015986	protein coding gene	Chr1:70602408-70623300 (+)
LP/J	MGP_LPJ_G0016055	protein coding gene	Chr1:75800954-75825243 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016006	protein coding gene	Chr1:83556773-83582169 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016578	protein coding gene	Chr1:74145400-74169355 (+)
PWK/PhJ	MGP_PWKPhJ_G0015280	protein coding gene	Chr1:70864835-70889424 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015058	protein coding gene	Chr1:73514534-73537484 (+)
WSB/EiJ	MGP_WSBEiJ_G0015555	protein coding gene	Chr1:73951085-73975279 (+)

Human Ortholog

RUFY4, RUN and FYVE domain containing 4

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

RUFY4, RUN and FYVE domain containing 4
Synonyms

ZFYVE31
Links

HGNC:24804

NCBI Gene ID: 285180

neXtProt AC: NX_Q6ZNE9

UniProt: Q6ZNE9
Chr Location

2q35; chr2:218034934-218090652 (+) GRCh38

MGI Vertebrate Homology

Rufy4 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: RUFY4
Gene Tree

Rufy4

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Phenotype Summary

4 phenotypes from 1 allele in 1 genetic background
10 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

8
Chemically induced (other)

1
Endonuclease-mediated

5
Gene trapped

1
Radiation induced

1
Genomic Mutations

2 involving Rufy4
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

110 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

16
GO References

5

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

713
Tissues

5
cDNA Data

5
Literature Summary

2

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

48
RefSeq

20
UniProt

1
CCDS

CCDS15039.1, CCDS48289.1

Ensembl

ENSMUSG00000061815 (Evidence)
NCBI Gene

435626

			Length	Strain/Species	Flank
genomic	ENSMUSG00000061815	Ensembl Gene Model \| MGI Sequence Detail	22683	C57BL/6J	± kb
transcript	ENSMUST00000127134	Ensembl \| MGI Sequence Detail	1841	Not Applicable
polypeptide	ENSMUSP00000115873	Ensembl \| MGI Sequence Detail	563	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000031545 RUN and FYVE domain-containing protein 4

(term hierarchy)
InterPro Domains

IPR042939 RUN and FYVE domain-containing protein 4

IPR004012 RUN domain

IPR037213 RUN domain superfamily

IPR011011 Zinc finger, FYVE/PHD-type

IPR017455 Zinc finger, FYVE-related

IPR013083 Zinc finger, RING/FYVE/PHD-type

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All nucleic 7

cDNA 5

Primer pair 2

Microarray probesets 1

Summaries

All 31

Developmental Gene Expression 2

Gene Ontology 5

Phenotypes 10
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:354513 Kim M, et al., RUFY4 deletion prevents pathological bone loss by blocking endo-lysosomal trafficking of osteoclasts. Bone Res. 2024 May 15;12(1):29

TSS for Rufy4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7353	Chr1:74164694-74164727 (+)	11 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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