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Secisbp2 Gene Detail
Summary
  • Symbol
    Secisbp2
  • Name
    SECIS binding protein 2
  • Synonyms
    2210413N07Rik, 2810012K13Rik, SBP2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922670
    NCBI Gene: 75420
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:51805733-51838080 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 26.12 cM, cytoband B1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    913 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922670
 protein coding gene Chr13:51805721-51838080 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020552
 protein coding gene Chr13:50874757-50911231 (+)
A/J MGP_AJ_G0020506
 protein coding gene Chr13:49070926-49104397 (+)
AKR/J MGP_AKRJ_G0020484
 protein coding gene Chr13:50465297-50497443 (+)
BALB/cJ MGP_BALBcJ_G0020502
 protein coding gene Chr13:49259304-49291391 (+)
C3H/HeJ MGP_C3HHeJ_G0020301
 protein coding gene Chr13:50305823-50340755 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020936
 protein coding gene Chr13:52442196-52475354 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018518
 protein coding gene Chr13:46868588-46901541 (+)
CAST/EiJ MGP_CASTEiJ_G0019815
 protein coding gene Chr13:50266749-50303383 (+)
CBA/J MGP_CBAJ_G0020261
 protein coding gene Chr13:54473870-54509018 (+)
DBA/2J MGP_DBA2J_G0020384
 protein coding gene Chr13:48638418-48671146 (+)
FVB/NJ MGP_FVBNJ_G0020363
 protein coding gene Chr13:48066540-48098408 (+)
LP/J MGP_LPJ_G0020460
 protein coding gene Chr13:51145100-51179779 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020392
 protein coding gene Chr13:54072015-54110919 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020979
 protein coding gene Chr13:50038507-50074099 (+)
PWK/PhJ MGP_PWKPhJ_G0019572
 protein coding gene Chr13:48559067-48593038 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019399
 protein coding gene Chr13:48925411-48962823 (+)
WSB/EiJ MGP_WSBEiJ_G0019877
 protein coding gene Chr13:50347090-50378739 (+)



Homology
more
  • Human Ortholog
    SECISBP2, SECIS binding protein 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SECISBP2, SECIS binding protein 2
  • Synonyms
    SBP2, THMA1
  • Links
    NCBI Gene ID: 79048
    neXtProt AC: NX_Q96T21
    UniProt: Q96T21

  • Chr Location
    9q22.2; chr9:89318500-89367117 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human SECISBP2 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotypes from 5 alleles in 6 genetic backgrounds
    22 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit complete preweaning lethality while heterozygotes exhibit reduced serum selenium levels.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    30
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    4
  • cDNA Data
    55
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000035139 Ensembl Gene Model | MGI Sequence Detail 32348 C57BL/6J ±  kb
    transcript ENSMUST00000040117 Ensembl | MGI Sequence Detail 3328 Not Applicable  
    polypeptide ENSMUSP00000045740 Ensembl | MGI Sequence Detail 858 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR029064 Ribosomal protein eL30-like superfamily
      IPR004038 Ribosomal protein eL8/eL30/eS12/Gadd45
      IPR040051 Selenocysteine insertion sequence-binding protein 2
    • GlyGen
      Q3U1C4 1 site, 1 N-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 57
      cDNA 57

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1919610
    References
    more
    • Summaries
      All 54
      Developmental Gene Expression 2
      Gene Ontology 8
      Phenotypes 22
    • Earliest
      J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    10/22/2024
    MGI 6.24     		The Jackson Laboratory