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Trmt10c Gene Detail
Summary
  • Symbol
    Trmt10c
  • Name
    tRNA methyltransferase 10C, mitochondrial RNase P subunit
  • Synonyms
    1300018J16Rik, D16Ertd454e, Rg9mtd1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1196261
    NCBI Gene: 52575
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:55854083-55858149 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 33.79 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    244 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1196261
 protein coding gene Chr16:55852972-55858182 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022886
 protein coding gene Chr16:55136805-55142023 (-)
A/J MGP_AJ_G0022853
 protein coding gene Chr16:52765089-52770299 (-)
AKR/J MGP_AKRJ_G0022825
 protein coding gene Chr16:54432615-54437825 (-)
BALB/cJ MGP_BALBcJ_G0022853
 protein coding gene Chr16:52866764-52871974 (-)
C3H/HeJ MGP_C3HHeJ_G0022616
 protein coding gene Chr16:54622077-54627287 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023301
 protein coding gene Chr16:56679960-56685170 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020812
 protein coding gene Chr16:52483294-52488520 (-)
CAST/EiJ MGP_CASTEiJ_G0022143
 protein coding gene Chr16:55024512-55029740 (-)
CBA/J MGP_CBAJ_G0022589
 protein coding gene Chr16:58944414-58949531 (-)
DBA/2J MGP_DBA2J_G0022721
 protein coding gene Chr16:52518777-52523987 (-)
FVB/NJ MGP_FVBNJ_G0022696
 protein coding gene Chr16:52285338-52290556 (-)
LP/J MGP_LPJ_G0022788
 protein coding gene Chr16:54948409-54953600 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022714
 protein coding gene Chr16:59253671-59258969 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023316
 protein coding gene Chr16:54591128-54596338 (-)
PWK/PhJ MGP_PWKPhJ_G0021882
 protein coding gene Chr16:52866724-52871848 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021712
 protein coding gene Chr16:54383775-54388994 (-)
WSB/EiJ MGP_WSBEiJ_G0022187
 protein coding gene Chr16:54616109-54621319 (-)



Homology
more
  • Human Ortholog
    TRMT10C, tRNA methyltransferase 10C, mitochondrial RNase P subunit
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRMT10C, tRNA methyltransferase 10C, mitochondrial RNase P subunit
  • Synonyms
    COXPD30, HNYA, MRPP1, RG9MTD1
  • Links
    NCBI Gene ID: 54931
    neXtProt AC: NX_Q7L0Y3
    UniProt: Q7L0Y3

  • Chr Location
    3q12.3; chr3:101561868-101566446 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human TRMT10C associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    39
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1046
  • Tissues
    65
  • cDNA Data
    40
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 52575 NCBI Gene Model | MGI Sequence Detail 4067 C57BL/6J ±  kb
transcript NM_029092 RefSeq | MGI Sequence Detail 1858 ZRU/MplStud  
polypeptide Q3UFY8 UniProt | EBI | MGI Sequence Detail 414 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 41
    cDNA 40
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1922015
References
more
  • Summaries
    All 39
    Developmental Gene Expression 3
    Gene Ontology 8
    Phenotypes 9
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory