4930579G24Rik MGI Mouse Gene Detail - MGI:1923189

Symbol

4930579G24Rik
Name

RIKEN cDNA 4930579G24 gene

Feature Type

protein coding gene
IDs

MGI:1923189
NCBI Gene: 75939
Alliance

gene page
Transcription Start Sites

3 TSS

Sequence Map

Chr3:79536386-79540127 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 34.93 cM, cytoband F1
Mapping Data

2 experiments

SNPs within 2kb

190 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1923189	protein coding gene	Chr3:79536386-79540127 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0027315	protein coding gene	Chr3:79338901-79342641 (+)
A/J	MGP_AJ_G0027277	protein coding gene	Chr3:76744781-76748518 (+)
AKR/J	MGP_AKRJ_G0027245	protein coding gene	Chr3:78512119-78515849 (+)
BALB/cJ	MGP_BALBcJ_G0027288	protein coding gene	Chr3:76773021-76776752 (+)
C3H/HeJ	MGP_C3HHeJ_G0027032	protein coding gene	Chr3:78842145-78845867 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0027734	protein coding gene	Chr3:82355468-82359108 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025087	protein coding gene	Chr3:72381002-72384614 (+)
CAST/EiJ	MGP_CASTEiJ_G0026479	protein coding gene	Chr3:78908842-78914733 (+)
CBA/J	MGP_CBAJ_G0027007	protein coding gene	Chr3:85087626-85091357 (+)
DBA/2J	MGP_DBA2J_G0027143	protein coding gene	Chr3:76299139-76302843 (+)
FVB/NJ	MGP_FVBNJ_G0027111	protein coding gene	Chr3:74640614-74644508 (+)
LP/J	MGP_LPJ_G0027251	protein coding gene	Chr3:80306233-80309962 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027130	protein coding gene	Chr3:91335055-91341549 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0027792	protein coding gene	Chr3:78350580-78354419 (+)
PWK/PhJ	MGP_PWKPhJ_G0026213	protein coding gene	Chr3:76058508-76062370 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0026029	protein coding gene	Chr3:77498357-77502094 (+)
WSB/EiJ	MGP_WSBEiJ_G0026557	protein coding gene	Chr3:78675116-78683651 (+)

Human Ortholog

C4orf46, chromosome 4 open reading frame 46

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C4orf46, chromosome 4 open reading frame 46
Synonyms

RCDG1
Links

HGNC:27320

NCBI Gene ID: 201725

neXtProt AC: NX_Q504U0

UniProt: Q504U0
Chr Location

4q32.1; chr4:158666675-158672255 (-) GRCh38

MGI Vertebrate Homology

4930579G24Rik stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: C4orf46
Gene Tree

4930579G24Rik

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References

1 with disease annotations

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Phenotype Summary

3 phenotypes from 1 allele in 1 genetic background
7 phenotype references

All Mutations and Alleles

7
Chemically induced (other)

1
Endonuclease-mediated

3
Gene trapped

2
Radiation induced

1
Genomic Mutations

2 involving 4930579G24Rik
Incidental Mutations

APF
Find Mice (IMSR)

7 strains or lines available

Homozygous knockout does not affect male fertility or spermatogenesis.

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All GO Annotations

2
GO References

2

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

21

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase c1h4orf46

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All Sequences

30
RefSeq

2
UniProt

1
CCDS

CCDS50936.1

Ensembl

ENSMUSG00000027811 (Evidence)
NCBI Gene

75939

			Length	Strain/Species	Flank
genomic	75939	NCBI Gene Model \| MGI Sequence Detail	3742	C57BL/6J	± kb
transcript	NM_029482	RefSeq \| MGI Sequence Detail	2004	C57BL/6
polypeptide	Q3UUX7	UniProt \| EBI \| MGI Sequence Detail	111	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000059803 renal cancer differentiation gene 1 protein

(term hierarchy)
InterPro Domains

IPR031457 Renal cancer differentiation gene 1 protein

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All nucleic 21

cDNA 21

Microarray probesets 2

Summaries

All 26

Diseases 1

Gene Ontology 2

Phenotypes 7
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for 4930579G24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29588	Chr3:79536381-79536422 (+)	16 bp
Tssr29589	Chr3:79536424-79536441 (+)	47 bp
Tssr29590	Chr3:79536446-79536483 (+)	79 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 10/22/2024 MGI 6.24