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Khdc1a Gene Detail
Summary
  • Symbol
    Khdc1a
  • Name
    KH domain containing 1A
  • Synonyms
    Ndg1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2676610
    NCBI Gene: 368204
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:21419901-21422423 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 6.59 cM, cytoband A4
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    237 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2676610
 protein coding gene Chr1:21419865-21422424 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015878
 protein coding gene Chr1:19009329-19013441 (+)
A/J MGP_AJ_G0015859
 protein coding gene Chr1:18763358-18766899 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0015816
 protein coding gene Chr1:18473810-18496171 (+)
C3H/HeJ MGP_C3HHeJ_G0015650
 protein coding gene Chr1:18868585-18870952 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016270
 protein coding gene Chr1:19907718-19913112 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013989
 protein coding gene Chr1:16938287-16940840 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0015622
 protein coding gene Chr1:20368517-20375231 (+)
DBA/2J MGP_DBA2J_G0015721
 protein coding gene Chr1:18269682-18282575 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0015793
 protein coding gene Chr1:19281097-19283450 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015744
 protein coding gene Chr1:21322982-21326300 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016316
 protein coding gene Chr1:18807251-18810029 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    KHDC1, KH domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KHDC1, KH domain containing 1
  • Synonyms
    bA257K9.4, C6orf147, C6orf148, Em:AC019205.8, NDG1
  • Links
    NCBI Gene ID: 80759
    neXtProt AC: NX_Q4VXA5
    UniProt: Q4VXA5

  • Chr Location
    6q13; chr6:73241314-73310378 (-)  GRCh38
  • Human Ortholog
    KHDC1L, KH domain containing 1 like
  • Links
    NCBI Gene ID: 100129128
    neXtProt AC: NX_Q5JSQ8
    UniProt: Q5JSQ8

  • Chr Location
    6q13; chr6:73223544-73225770 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    770
  • Tissues
    36
  • cDNA Data
    7
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 368204 NCBI Gene Model | MGI Sequence Detail 2523 C57BL/6J ±  kb
transcript NM_183322 RefSeq | MGI Sequence Detail 1950 C57BL/6  
polypeptide Q3UWR2 UniProt | EBI | MGI Sequence Detail 166 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 7
    Primer pair 2
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2138405, MGI:2138722
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 3
  • Earliest
    J:11444 Motoyama N, et al., Somatic mutation in constant regions of mouse lambda 1 light chains. Proc Natl Acad Sci U S A. 1991 Sep 15;88(18):7933-7
  • Latest
    J:182840 Cai C, et al., KHDC1B is a novel CPEB binding partner specifically expressed in mouse oocytes and early embryos. Mol Biol Cell. 2010 Sep 15;21(18):3137-48
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory