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Samd5 Gene Detail
Summary
  • Symbol
    Samd5
  • Name
    sterile alpha motif domain containing 5
  • Synonyms
    E130306M17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444815
    NCBI Gene: 320825
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:9498680-9550952 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 3.15 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1681 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444815
 protein coding gene Chr10:9138205-9551670 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017006
 protein coding gene Chr10:6961675-7011358 (-)
A/J MGP_AJ_G0016984
 protein coding gene Chr10:6635336-6684993 (-)
AKR/J MGP_AKRJ_G0016948
 protein coding gene Chr10:6776959-6825290 (-)
BALB/cJ MGP_BALBcJ_G0016942
 protein coding gene Chr10:6589827-6638775 (-)
C3H/HeJ MGP_C3HHeJ_G0016767
 protein coding gene Chr10:6930014-6982476 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017404
 protein coding gene Chr10:7094785-7150020 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015109
 protein coding gene Chr10:6120334-6168928 (-)
CAST/EiJ MGP_CASTEiJ_G0016349
 protein coding gene Chr10:6832009-6881544 (-)
CBA/J MGP_CBAJ_G0016739
 protein coding gene Chr10:7371729-7426210 (-)
DBA/2J MGP_DBA2J_G0016847
 protein coding gene Chr10:6534782-6583791 (-)
FVB/NJ MGP_FVBNJ_G0016842
 protein coding gene Chr10:6480542-6530798 (-)
LP/J MGP_LPJ_G0016922
 protein coding gene Chr10:6750208-6798285 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016872
 protein coding gene Chr10:7223158-7279474 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017442
 protein coding gene Chr10:6718290-6768817 (-)
PWK/PhJ MGP_PWKPhJ_G0016134
 protein coding gene Chr10:6493554-6544334 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015917
 protein coding gene Chr10:6809266-6860803 (-)
WSB/EiJ MGP_WSBEiJ_G0016411
 protein coding gene Chr10:6714741-6765955 (-)



Homology
more
  • Human Ortholog
    SAMD5, sterile alpha motif domain containing 5
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SAMD5, sterile alpha motif domain containing 5
  • Synonyms
    dJ875H10.1
  • Links
    NCBI Gene ID: 389432
    neXtProt AC: NX_Q5TGI4
    UniProt: Q5TGI4

  • Chr Location
    6q24.3; chr6:147508690-147954680 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    716
  • Tissues
    2
  • cDNA Data
    16
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000060487 Ensembl Gene Model | MGI Sequence Detail 52273 C57BL/6J ±  kb
transcript ENSMUST00000100070 Ensembl | MGI Sequence Detail 6818 Not Applicable  
polypeptide ENSMUSP00000097648 Ensembl | MGI Sequence Detail 173 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 4
References
more
  • Summaries
    All 20
    Developmental Gene Expression 1
    Gene Ontology 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:245700 Yagai T, et al., Expression and localization of sterile alpha motif domain containing 5 is associated with cell type and malignancy of biliary tree. PLoS One. 2017;12(4):e0175355
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory