Trcg1 Gene Detail

Summary

• Symbol
  Trcg1
• Name
  taste receptor cell gene 1

• Feature Type
  protein coding gene
• IDs
  MGI:3576664
  NCBI Gene: 541610
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:57143839-57157147 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 30.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  446 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3576664	protein coding gene	Chr9:57143839-57157147 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0034862	protein coding gene	Chr9:56419992-56434843 (+)
A/J	MGP_AJ_G0034843	protein coding gene	Chr9:54605984-54620102 (+)
AKR/J	MGP_AKRJ_G0034772	protein coding gene	Chr9:55873773-55886886 (+)
BALB/cJ	MGP_BALBcJ_G0034835	protein coding gene	Chr9:54398428-54411525 (+)
C3H/HeJ	MGP_C3HHeJ_G0034545	protein coding gene	Chr9:56344500-56357667 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035354	protein coding gene	Chr9:58012120-58026435 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032265	protein coding gene	Chr9:53932479-53946174 (+)
CAST/EiJ	MGP_CASTEiJ_G0033866	protein coding gene	Chr9:56422102-56437255 (+)
CBA/J	MGP_CBAJ_G0034516	protein coding gene	Chr9:60044066-60057373 (+)
DBA/2J	MGP_DBA2J_G0034675	protein coding gene	Chr9:54485913-54499256 (+)
FVB/NJ	MGP_FVBNJ_G0034617	protein coding gene	Chr9:53705051-53718542 (+)
LP/J	MGP_LPJ_G0034758	protein coding gene	Chr9:56716574-56730652 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034660	protein coding gene	Chr9:61509693-61524394 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035376	protein coding gene	Chr9:55890188-55905666 (+)
PWK/PhJ	MGP_PWKPhJ_G0033571	protein coding gene	Chr9:54508620-54522045 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033405	protein coding gene	Chr9:56173294-56186317 (+)
WSB/EiJ	MGP_WSBEiJ_G0033979	protein coding gene	Chr9:55820584-55834896 (+)

Homology

• Gene Tree
  Trcg1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  25 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  744
• Tissues
  25
• cDNA Data
  4
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS23218.1

• Ensembl
  ENSMUSG00000070298 (Evidence)
• NCBI Gene
  541610

Representative Sequences			Length	Strain/Species
genomic	541610	NCBI Gene Model | MGI Sequence Detail	13309	C57BL/6J
transcript	NM_001014398	RefSeq | MGI Sequence Detail	2727	C57BL/6
polypeptide	Q58Y74	UniProt | EBI | MGI Sequence Detail	825	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• Protein Ontology
  PR:000016938 taste receptor cell protein 1
  (term hierarchy)

Molecular
Reagents

• All nucleic 5

  cDNA 4

  Primer pair 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582