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Abcd2 Gene Detail
Summary
  • Symbol
    Abcd2
  • Name
    ATP-binding cassette, sub-family D member 2
  • Synonyms
    ABC39, adrenoleukodystrophy related, ALDL1, ALDR
  • Feature Type
    protein coding gene
  • IDs
    MGI:1349467
    NCBI Gene: 26874
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:91030074-91076002 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 46.00 cM, cytoband E-F
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1722 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1349467
 protein coding gene Chr15:91029874-91076013 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022246
 protein coding gene Chr15:92422507-92471056 (-)
A/J MGP_AJ_G0022205
 protein coding gene Chr15:88856805-88902571 (-)
AKR/J MGP_AKRJ_G0022180
 protein coding gene Chr15:91495852-91544396 (-)
BALB/cJ MGP_BALBcJ_G0022211
 protein coding gene Chr15:88977763-89024244 (-)
C3H/HeJ MGP_C3HHeJ_G0021981
 protein coding gene Chr15:91494478-91540160 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022656
 protein coding gene Chr15:95810251-95858250 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020182
 protein coding gene Chr15:85002244-85050067 (-)
CAST/EiJ MGP_CASTEiJ_G0021503
 protein coding gene Chr15:92305545-92357682 (-)
CBA/J MGP_CBAJ_G0021948
 protein coding gene Chr15:99012823-99067270 (-)
DBA/2J MGP_DBA2J_G0022075
 protein coding gene Chr15:88305858-88352384 (-)
FVB/NJ MGP_FVBNJ_G0022054
 protein coding gene Chr15:87348295-87393988 (-)
LP/J MGP_LPJ_G0022146
 protein coding gene Chr15:92560876-92609121 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022074
 protein coding gene Chr15:103405898-103459731 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022671
 protein coding gene Chr15:91606921-91652763 (-)
PWK/PhJ MGP_PWKPhJ_G0021244
 protein coding gene Chr15:88353135-88397495 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021078
 protein coding gene Chr15:91322967-91372952 (-)
WSB/EiJ MGP_WSBEiJ_G0021552
 protein coding gene Chr15:92061762-92109458 (-)



Homology
more
  • Human Ortholog
    ABCD2, ATP binding cassette subfamily D member 2
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ABCD2, ATP binding cassette subfamily D member 2
  • Synonyms
    ABC39, ALDL1, ALDR, ALDRP, hALDR
  • Links
    NCBI Gene ID: 225
    neXtProt AC: NX_Q9UBJ2
    UniProt: Q9UBJ2

  • Chr Location
    12q12; chr12:39531025-39619803 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotypes from 1 allele in 1 genetic background
    20 phenotypes from multigenic genotypes
    39 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a disruption in this gene exhibit a late-onset cerebellar and sensory ataxia, loss of Purkinje cells, dorsal root ganglia cell degeneration, axonal degeneration in the spinal cord, and an accumulation of very long chain fatty acids.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    46
  • GO References
    17
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    973
  • Tissues
    122
  • cDNA Data
    46
  • Literature Summary
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000055782 Ensembl Gene Model | MGI Sequence Detail 45929 C57BL/6J ±  kb
    transcript ENSMUST00000069511 Ensembl | MGI Sequence Detail 5532 Not Applicable  
    polypeptide ENSMUSP00000068940 Ensembl | MGI Sequence Detail 741 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 49
      Genomic 2
      cDNA 46
      Primer pair 1

      Microarray probesets 6
    References
    more
    • Summaries
      All 86
      Developmental Gene Expression 8
      Diseases 1
      Gene Ontology 17
      Phenotypes 39
    • Earliest
      J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
    • Latest
      J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory